Gene family  

Sub-families
ORTHO002840 (31 genes in 23 species)
ORTHO007338 (23 genes in 21 species)
ORTHO014380 (12 genes in 9 species)
View all sub-families (8)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (14 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (7 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (11 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (6 genes)



The gene family HOM001074 has 105 genes in 25 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 105 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G03050 aly name=scaffold_500325.1;pid=904621;prot=eq;tid=936134 + scaffold_5 No
AL6G19080 aly name=scaffold_601970.1;pid=909913;prot=eq;tid=941426 + scaffold_6 No
AL7G25780 aly name=fgenesh2_kg.7__2581__AT4G17270.1;pid=493148;prot=eq;tid=493148 - scaffold_7 No
AL8G00360 aly name=scaffold_800035.1;pid=916635;prot=eq;tid=948148 + scaffold_8 No
AT2G03410 ath Mo25 family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sepal, male gametophyte, flower, stamen, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Mo25-like (InterPro:IPR013878), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Mo25 family protein (TAIR:AT5G47540.1); Has 558 Blast hits to 558 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 211; Fungi - 140; Plants - 153; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).;Mo25 family protein transcript=eq;prot=eq; + 2 No
AT4G17270 ath Mo25 family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mo25-like (InterPro:IPR013878), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Mo25 family protein (TAIR:AT5G47540.1); Has 574 Blast hits to 572 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 219; Fungi - 142; Plants - 154; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).;Mo25 family protein transcript=eq;prot=eq; + 4 No
AT5G18940 ath Mo25 family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mo25-like (InterPro:IPR013878), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Mo25 family protein (TAIR:AT5G47540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Mo25 family protein transcript=eq;prot=eq; + 5 No
AT5G47540 ath Mo25 family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mo25-like (InterPro:IPR013878), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Mo25 family protein (TAIR:AT4G17270.1); Has 570 Blast hits to 568 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 216; Fungi - 142; Plants - 154; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).;Mo25 family protein transcript=eq;prot=eq; - 5 No
BD1G19570 bdi protein serine/threonine kinase activity (Blast2GO) pid=Bradi1g19570.1;tid=Bradi1g19570.1;GeneName=Bradi1g19570;transcript=eq;prot=eq - Bd1 No
BD1G23250 bdi protein serine/threonine kinase activity (Blast2GO) pid=Bradi1g23250.1;tid=Bradi1g23250.1;GeneName=Bradi1g23250;transcript=eq;prot=eq - Bd1 No
BD1G61840 bdi protein serine/threonine kinase activity (Blast2GO) pid=Bradi1g61840.1;tid=Bradi1g61840.1;GeneName=Bradi1g61840;transcript=eq;prot=eq + Bd1 No
BD2G31200 bdi protein serine/threonine kinase activity (Blast2GO) pid=Bradi2g31200.1;tid=Bradi2g31200.1;GeneName=Bradi2g31200;transcript=eq;prot=eq - Bd2 No
CP00016G00590 cpa name=evm.TU.supercontig_16.59;pid=evm.TU.supercontig_16.59;prot=eq;transcript=eq - supercontig_16 No
CP00075G00970 cpa name=evm.TU.supercontig_75.97;pid=evm.TU.supercontig_75.97;prot=eq;transcript=eq - supercontig_75 No
CP00395G00050 cpa name=evm.TU.supercontig_395.5;pid=evm.TU.supercontig_395.5;prot=eq;transcript=eq - supercontig_395 No
CR17G02940 cre name=pasa_Sanger_mRNA16365;pid=409172;prot=eq;tid=406696;transcript=eq + chromosome_17 No
FV3G02420 fve Putative MO25-like protein At5g47540 (similar to) transcript=eq;prot=eq;pid=gene19789 + LG3 No
FV3G03600 fve Putative MO25-like protein At5g47540 (similar to) transcript=eq;prot=eq;pid=gene21641 + LG3 No
FV4G16130 fve Calcium-binding protein 39 (probable) transcript=eq;prot=eq;pid=gene06142 - LG4 No
GM02G47710 gma 02 pid=16250543;transcript=eq;prot=eq;name=Glyma02g47710.1 - Gm02 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier