Gene family  

Sub-families
ORTHO004009 (28 genes in 25 species)
ORTHO009966 (19 genes in 15 species)
ORTHO012264 (16 genes in 11 species)
View all sub-families (11)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (5 genes)
gma
Glycine max (10 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (8 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (8 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (8 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (7 genes)



The gene family HOM001063 has 106 genes in 25 species (7 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 106 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G24860 aly name=scaffold_202547.1;pid=895473;prot=eq;tid=926986 - scaffold_2 No
AL6G21420 aly name=fgenesh2_kg.6__2160__AT5G21160.1;pid=489026;prot=eq;tid=489026 - scaffold_6 No
AL7G04870 aly name=fgenesh1_pg.C_scaffold_7000413;pid=353240;prot=eq;tid=353240 - scaffold_7 No
AL8G34580 aly name=fgenesh2_kg.8__2822__AT5G66100.1;pid=497006;prot=eq;tid=497006 - scaffold_8 No
AT4G35890 ath winged-helix DNA-binding transcription factor family protein; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT5G66100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;winged-helix DNA-binding transcription factor family protein transcript=eq;prot=eq; + 4 No
AT5G21160 ath LA RNA-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Protein of unknown function DM15 (InterPro:IPR006607); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G35890.1).;LA RNA-binding protein transcript=eq;prot=eq; - 5 No
AT5G66100 ath winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G35890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;winged-helix DNA-binding transcription factor family protein transcript=eq;prot=eq; + 5 No
BD1G00820 bdi 5S rRNA primary transcript binding (Blast2GO) pid=Bradi1g00820.1;tid=Bradi1g00820.1;GeneName=Bradi1g00820;transcript=eq;prot=eq - Bd1 No
BD1G74700 bdi 5S rRNA primary transcript binding (Blast2GO) pid=Bradi1g74700.1;tid=Bradi1g74700.1;GeneName=Bradi1g74700;transcript=eq;prot=eq - Bd1 No
BD2G09860 bdi pid=Bradi2g09860.1;tid=Bradi2g09860.1;GeneName=Bradi2g09860;transcript=eq;prot=eq + Bd2 No
BD4G36594 bdi pid=Bradi4g36594.3;tid=Bradi4g36594.3;GeneName=Bradi4g36594;transcript=eq;prot=eq - Bd4 No
CP00006G02940 cpa name=evm.TU.supercontig_6.295;pid=evm.TU.supercontig_6.295;prot=eq;transcript=eq - supercontig_6 No
CP00026G02860 cpa name=evm.TU.supercontig_26.286;pid=evm.TU.supercontig_26.286;prot=eq;transcript=eq + supercontig_26 No
CP00026G02870 cpa name=evm.TU.supercontig_26.287;pid=evm.TU.supercontig_26.287;prot=eq;transcript=eq + supercontig_26 No
CP00034G02170 cpa name=evm.TU.supercontig_34.218;pid=evm.TU.supercontig_34.218;prot=eq;transcript=eq + supercontig_34 Yes
CP00034G02180 cpa name=evm.TU.supercontig_34.219;pid=evm.TU.supercontig_34.219;prot=eq;transcript=eq + supercontig_34 No
CR10G05090 cre name=OVA_fgenesh1_pg.C_scaffold_10000098;pid=206445;prot=eq;tid=206450;transcript=eq - chromosome_10 No
FV0G03990 fve La-related protein 1 (probable) transcript=eq;prot=eq;pid=gene04594 - scf0513158 No
FV1G13110 fve hypothetical protein transcript=eq;prot=eq;pid=gene14555 + LG1 No
FV2G38080 fve La-related protein 1 (similar to) transcript=eq;prot=eq;pid=gene08568 + LG2 No
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