Gene family  

Sub-families
ORTHO003700 (28 genes in 23 species)
ORTHO008597 (21 genes in 18 species)
ORTHO019203 (6 genes in 5 species)
View all sub-families (11)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (5 genes)
gma
Glycine max (5 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (16 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (8 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ota
Ostreococcus tauri (1 gene)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (6 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (6 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (8 genes)



The gene family HOM001058 has 106 genes in 24 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 106 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G03620 aly name=scaffold_100386.1;pid=887592;prot=eq;tid=919105 - scaffold_1 No
AL3G17180 aly name=fgenesh1_pm.C_scaffold_3001409;pid=318393;prot=eq;tid=318393 + scaffold_3 No
AL4G14100 aly name=fgenesh2_kg.4__933__AT2G29590.1;pid=481873;prot=eq;tid=481873 - scaffold_4 No
AT1G04290 ath Thioesterase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683), Phenylacetic acid degradation-related protein (InterPro:IPR003736); BEST Arabidopsis thaliana protein match is: Thioesterase superfamily protein (TAIR:AT2G29590.1); Has 964 Blast hits to 962 proteins in 292 species: Archae - 38; Bacteria - 286; Metazoa - 202; Fungi - 157; Plants - 213; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).;Thioesterase superfamily protein transcript=eq;prot=eq; - 1 No
AT1G52191 ath Thioesterase superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Thioesterase superfamily protein (TAIR:AT3G16175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Thioesterase superfamily protein transcript=eq;prot=eq; - 1 No
AT2G29590 ath Thioesterase superfamily protein; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683); BEST Arabidopsis thaliana protein match is: Thioesterase superfamily protein (TAIR:AT1G04290.1); Has 283 Blast hits to 282 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 21; Plants - 166; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).;Thioesterase superfamily protein transcript=eq;prot=eq; - 2 No
AT3G16175 ath Thioesterase superfamily protein; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683); BEST Arabidopsis thaliana protein match is: Thioesterase superfamily protein (TAIR:AT1G52191.1); Has 298 Blast hits to 297 proteins in 61 species: Archae - 0; Bacteria - 6; Metazoa - 132; Fungi - 4; Plants - 150; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).;Thioesterase superfamily protein transcript=eq;prot=eq; + 3 No
BD2G07740 bdi pid=Bradi2g07740.1;tid=Bradi2g07740.1;GeneName=Bradi2g07740;transcript=eq;prot=eq + Bd2 No
BD2G56940 bdi pid=Bradi2g56940.1;tid=Bradi2g56940.1;GeneName=Bradi2g56940;transcript=eq;prot=eq + Bd2 No
BD4G07920 bdi pid=Bradi4g07920.1;tid=Bradi4g07920.1;GeneName=Bradi4g07920;transcript=eq;prot=eq - Bd4 No
BD4G09050 bdi pid=Bradi4g09050.1;tid=Bradi4g09050.1;GeneName=Bradi4g09050;transcript=eq;prot=eq + Bd4 No
BD5G10600 bdi pid=Bradi5g10600.2;tid=Bradi5g10600.2;GeneName=Bradi5g10600;transcript=eq;prot=eq - Bd5 No
CP00009G02130 cpa name=evm.TU.supercontig_9.213;pid=evm.TU.supercontig_9.213;prot=eq;transcript=eq + supercontig_9 No
CP00009G02140 cpa name=evm.TU.supercontig_9.214;pid=evm.TU.supercontig_9.214;prot=eq;transcript=eq + supercontig_9 No
CP00138G00280 cpa name=evm.TU.supercontig_138.28;pid=evm.TU.supercontig_138.28;prot=eq;transcript=eq - supercontig_138 No
CR07G02260 cre name=au.g13897_t1;pid=296240;prot=eq;tid=296247;transcript=eq + chromosome_7 Yes
FV3G10080 fve Acyl-coenzyme A thioesterase 13 (probable) transcript=eq;prot=eq;pid=gene20096 - LG3 No
FV3G21750 fve G-protein coupled receptor-associated sorting protein 2 (GASP-2) (probable) transcript=eq;prot=eq;pid=gene07971 - LG3 No
FV3G21790 fve Acyl-coenzyme A thioesterase 13 (probable) transcript=eq;prot=eq;pid=gene07974 - LG3 No
FV3G21800 fve Acyl-coenzyme A thioesterase 13 (probable) transcript=eq;prot=eq;pid=gene07975 - LG3 No
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