Gene family  

Sub-families
ORTHO001326 (39 genes in 19 species)
ORTHO001520 (37 genes in 21 species)
ORTHO072719 (2 genes in 2 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (12 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (6 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (4 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (14 genes)



The gene family HOM001050 has 106 genes in 21 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 106 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G12330 aly name=scaffold_101310.1;pid=888516;prot=eq;tid=920029 - scaffold_1 No
AL1G22160 aly name=fgenesh2_kg.1__2287__AT1G20950.1;pid=472333;prot=eq;tid=472333 - scaffold_1 No
AL2G25500 aly name=fgenesh2_kg.2__1943__AT1G76550.1;pid=476813;prot=eq;tid=476813 - scaffold_2 No
AL3G33940 aly name=Al_scaffold_0003_3295;pid=874654;prot=eq;tid=906167 + scaffold_3 No
AL6G36050 aly name=scaffold_603735.1;pid=911678;prot=eq;tid=943191 + scaffold_6 Yes
AL6G36110 aly name=fgenesh2_kg.6__3209__AT4G04040.1;pid=490075;prot=eq;tid=490075 + scaffold_6 No
AL7G22650 aly name=Al_scaffold_0007_2174;pid=858675;prot=eq;tid=890188 - scaffold_7 No
AT1G12000 ath Phosphofructokinase family protein; FUNCTIONS IN: diphosphate-fructose-6-phosphate 1-phosphotransferase activity; INVOLVED IN: response to cadmium ion, glycolysis, photosynthesis; LOCATED IN: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex, cell wall, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase PfpB (InterPro:IPR011183), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: Phosphofructokinase family protein (TAIR:AT4G04040.1); Has 6357 Blast hits to 6276 proteins in 1942 species: Archae - 28; Bacteria - 4805; Metazoa - 61; Fungi - 134; Plants - 409; Viruses - 4; Other Eukaryotes - 916 (source: NCBI BLink).;Phosphofructokinase family protein transcript=eq;prot=eq; - 1 No
AT1G20950 ath Phosphofructokinase family protein; FUNCTIONS IN: diphosphate-fructose-6-phosphate 1-phosphotransferase activity; INVOLVED IN: response to fructose stimulus, response to sucrose stimulus, photosynthesis, response to glucose stimulus; LOCATED IN: pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase PfpB (InterPro:IPR011183), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: Phosphofructokinase family protein (TAIR:AT1G76550.1); Has 4397 Blast hits to 4316 proteins in 1453 species: Archae - 20; Bacteria - 3299; Metazoa - 3; Fungi - 0; Plants - 433; Viruses - 0; Other Eukaryotes - 642 (source: NCBI BLink).;Phosphofructokinase family protein transcript=eq;prot=eq; - 1 No
AT1G76550 ath Phosphofructokinase family protein; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase PfpB (InterPro:IPR011183), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: Phosphofructokinase family protein (TAIR:AT1G20950.1); Has 4956 Blast hits to 4876 proteins in 1678 species: Archae - 20; Bacteria - 3823; Metazoa - 10; Fungi - 6; Plants - 430; Viruses - 0; Other Eukaryotes - 667 (source: NCBI BLink).;Phosphofructokinase family protein transcript=eq;prot=eq; - 1 No
AT4G04040 ath maternal effect embryo arrest 51 (MEE51); CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase PfpB (InterPro:IPR011183), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: Phosphofructokinase family protein (TAIR:AT1G12000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Phosphofructokinase family protein transcript=eq;prot=eq; + 4 No
AT4G08876 ath pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related; BEST Arabidopsis thaliana protein match is: Phosphofructokinase family protein (TAIR:AT4G04040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related transcript=eq;prot=eq; + 4 No
BD1G42630 bdi 6-phosphofructokinase activity, diphosphate-fructose-6-phosphate 1-phosphotransferase activity (Blast2GO) pid=Bradi1g42630.1;tid=Bradi1g42630.1;GeneName=Bradi1g42630;transcript=eq;prot=eq + Bd1 No
BD1G44460 bdi 6-phosphofructokinase activity, diphosphate-fructose-6-phosphate 1-phosphotransferase activity (Blast2GO) pid=Bradi1g44460.1;tid=Bradi1g44460.1;GeneName=Bradi1g44460;transcript=eq;prot=eq + Bd1 No
BD3G22340 bdi 6-phosphofructokinase activity, diphosphate-fructose-6-phosphate 1-phosphotransferase activity (Blast2GO) pid=Bradi3g22340.1;tid=Bradi3g22340.1;GeneName=Bradi3g22340;transcript=eq;prot=eq - Bd3 No
BD3G53260 bdi 6-phosphofructokinase activity, diphosphate-fructose-6-phosphate 1-phosphotransferase activity (Blast2GO) pid=Bradi3g53260.1;tid=Bradi3g53260.1;GeneName=Bradi3g53260;transcript=eq;prot=eq - Bd3 No
BD4G27010 bdi pid=Bradi4g27010.1;tid=Bradi4g27010.1;GeneName=Bradi4g27010;transcript=eq;prot=eq - Bd4 No
CP01180G00030 cpa name=evm.TU.supercontig_1180.3;pid=evm.TU.supercontig_1180.3;prot=eq;transcript=eq + supercontig_1180 No
CP24967G00050 cpa name=evm.TU.contig_24967.5;pid=evm.TU.contig_24967.5;prot=eq;transcript=eq - contig_24967 No
FV3G01710 fve Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta (PFP) (similar to) transcript=eq;prot=eq;pid=gene19511 - LG3 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier