Gene family  

Sub-families
ORTHO000552 (54 genes in 24 species)
ORTHO009260 (20 genes in 17 species)
ORTHO076421 (2 genes in 1 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (5 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (6 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (12 genes)
zma
Zea mays (9 genes)



The gene family HOM001043 has 107 genes in 25 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 107 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G10590 aly name=fgenesh2_kg.788__1__AT2G44120.1;pid=497533;prot=eq;tid=497533 + scaffold_788 No
AL2G29000 aly name=Al_scaffold_0002_2714;pid=878120;prot=eq;tid=909633 - scaffold_2 No
AL3G14120 aly name=fgenesh2_kg.3__1450__AT3G13580.2;pid=478749;prot=eq;tid=478749 + scaffold_3 No
AL4G31750 aly name=fgenesh2_kg.4__2594__AT2G44120.2;pid=483534;prot=eq;tid=483534 + scaffold_4 No
AL5G00190 aly name=fgenesh1_pm.C_scaffold_5000015;pid=322471;prot=eq;tid=322471 - scaffold_5 No
AT1G80750 ath Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, nucleolus, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT3G13580.1); Has 1152 Blast hits to 1152 proteins in 343 species: Archae - 126; Bacteria - 0; Metazoa - 424; Fungi - 213; Plants - 191; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).;Ribosomal protein L30/L7 family protein transcript=eq;prot=eq; + 1 No
AT2G01250 ath Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L30, conserved site (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT3G13580.1); Has 1297 Blast hits to 1295 proteins in 388 species: Archae - 210; Bacteria - 1; Metazoa - 453; Fungi - 213; Plants - 195; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).;Ribosomal protein L30/L7 family protein transcript=eq;prot=eq; - 2 No
AT2G44120 ath Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30, conserved site (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT2G01250.1); Has 1301 Blast hits to 1299 proteins in 392 species: Archae - 217; Bacteria - 1; Metazoa - 453; Fungi - 213; Plants - 195; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).;Ribosomal protein L30/L7 family protein transcript=eq;prot=eq; - 2 No
AT3G13580 ath Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L30, conserved site (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT2G01250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Ribosomal protein L30/L7 family protein transcript=eq;prot=eq; + 3 No
BD1G04950 bdi pid=Bradi1g04950.2;tid=Bradi1g04950.2;GeneName=Bradi1g04950;transcript=eq;prot=eq + Bd1 No
BD3G41850 bdi pid=Bradi3g41850.1;tid=Bradi3g41850.1;GeneName=Bradi3g41850;transcript=eq;prot=eq + Bd3 No
BD4G26680 bdi pid=Bradi4g26680.1;tid=Bradi4g26680.1;GeneName=Bradi4g26680;transcript=eq;prot=eq + Bd4 No
BD5G20900 bdi pid=Bradi5g20900.1;tid=Bradi5g20900.1;GeneName=Bradi5g20900;transcript=eq;prot=eq + Bd5 No
CP00010G00820 cpa name=evm.TU.supercontig_10.82;pid=evm.TU.supercontig_10.82;prot=eq;transcript=eq - supercontig_10 No
CP00021G02300 cpa name=evm.TU.supercontig_21.230;pid=evm.TU.supercontig_21.230;prot=eq;transcript=eq - supercontig_21 No
CP00048G00950 cpa name=evm.TU.supercontig_48.95;pid=evm.TU.supercontig_48.95;prot=eq;transcript=eq - supercontig_48 No
CP00072G00530 cpa name=evm.TU.supercontig_72.53;pid=evm.TU.supercontig_72.53;prot=eq;transcript=eq - supercontig_72 No
CR12G11370 cre name=SKA_chlre3.16.39.1.11;pid=206194;prot=eq;tid=206199;transcript=eq + chromosome_12 No
FV0G18400 fve 60S ribosomal protein L7-2 (putative) transcript=eq;prot=eq;pid=gene05665 - scf0513160 No
FV0G18630 fve 60S ribosomal protein L7-2 (similar to) transcript=eq;prot=eq;pid=gene05688 + scf0513160 No
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