Gene family 
- Id
- HOM001043
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO000552 (54 genes in 24 species)
ORTHO009260 (20 genes in 17 species)
ORTHO076421 (2 genes in 1 species)
View all sub-families (3)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (5 genes)
- ath
- Arabidopsis thaliana (4 genes)
- bdi
- Brachypodium distachyon (4 genes)
- cpa
- Carica papaya (4 genes)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (5 genes)
- gma
- Glycine max (6 genes)
- lja
- Lotus japonicus (6 genes)
- mdo
- Malus domestica (7 genes)
- mes
- Manihot esculenta (5 genes)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (3 genes)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (3 genes)
- osaindica
- Oryza sativa ssp. indica (3 genes)
- ota
- Ostreococcus tauri (1 gene)
- ppa
- Physcomitrella patens (5 genes)
- ptr
- Populus trichocarpa (6 genes)
- rco
- Ricinus communis (5 genes)
- sbi
- Sorghum bicolor (6 genes)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (3 genes)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (12 genes)
- zma
- Zea mays (9 genes)
The gene family HOM001043 has 107 genes in 25 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM001043
Page 1 of 6, showing 20 records out of 107 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL0G10590 | aly | name=fgenesh2_kg.788__1__AT2G44120.1;pid=497533;prot=eq;tid=497533 | + | scaffold_788 | No | |
| AL2G29000 | aly | name=Al_scaffold_0002_2714;pid=878120;prot=eq;tid=909633 | - | scaffold_2 | No | |
| AL3G14120 | aly | name=fgenesh2_kg.3__1450__AT3G13580.2;pid=478749;prot=eq;tid=478749 | + | scaffold_3 | No | |
| AL4G31750 | aly | name=fgenesh2_kg.4__2594__AT2G44120.2;pid=483534;prot=eq;tid=483534 | + | scaffold_4 | No | |
| AL5G00190 | aly | name=fgenesh1_pm.C_scaffold_5000015;pid=322471;prot=eq;tid=322471 | - | scaffold_5 | No | |
| AT1G80750 | ath | Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, nucleolus, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT3G13580.1); Has 1152 Blast hits to 1152 proteins in 343 species: Archae - 126; Bacteria - 0; Metazoa - 424; Fungi - 213; Plants - 191; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).;Ribosomal protein L30/L7 family protein | transcript=eq;prot=eq; | + | 1 | No |
| AT2G01250 | ath | Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L30, conserved site (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT3G13580.1); Has 1297 Blast hits to 1295 proteins in 388 species: Archae - 210; Bacteria - 1; Metazoa - 453; Fungi - 213; Plants - 195; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).;Ribosomal protein L30/L7 family protein | transcript=eq;prot=eq; | - | 2 | No |
| AT2G44120 | ath | Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30, conserved site (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT2G01250.1); Has 1301 Blast hits to 1299 proteins in 392 species: Archae - 217; Bacteria - 1; Metazoa - 453; Fungi - 213; Plants - 195; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).;Ribosomal protein L30/L7 family protein | transcript=eq;prot=eq; | - | 2 | No |
| AT3G13580 | ath | Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L30, conserved site (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT2G01250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Ribosomal protein L30/L7 family protein | transcript=eq;prot=eq; | + | 3 | No |
| BD1G04950 | bdi | pid=Bradi1g04950.2;tid=Bradi1g04950.2;GeneName=Bradi1g04950;transcript=eq;prot=eq | + | Bd1 | No | |
| BD3G41850 | bdi | pid=Bradi3g41850.1;tid=Bradi3g41850.1;GeneName=Bradi3g41850;transcript=eq;prot=eq | + | Bd3 | No | |
| BD4G26680 | bdi | pid=Bradi4g26680.1;tid=Bradi4g26680.1;GeneName=Bradi4g26680;transcript=eq;prot=eq | + | Bd4 | No | |
| BD5G20900 | bdi | pid=Bradi5g20900.1;tid=Bradi5g20900.1;GeneName=Bradi5g20900;transcript=eq;prot=eq | + | Bd5 | No | |
| CP00010G00820 | cpa | name=evm.TU.supercontig_10.82;pid=evm.TU.supercontig_10.82;prot=eq;transcript=eq | - | supercontig_10 | No | |
| CP00021G02300 | cpa | name=evm.TU.supercontig_21.230;pid=evm.TU.supercontig_21.230;prot=eq;transcript=eq | - | supercontig_21 | No | |
| CP00048G00950 | cpa | name=evm.TU.supercontig_48.95;pid=evm.TU.supercontig_48.95;prot=eq;transcript=eq | - | supercontig_48 | No | |
| CP00072G00530 | cpa | name=evm.TU.supercontig_72.53;pid=evm.TU.supercontig_72.53;prot=eq;transcript=eq | - | supercontig_72 | No | |
| CR12G11370 | cre | name=SKA_chlre3.16.39.1.11;pid=206194;prot=eq;tid=206199;transcript=eq | + | chromosome_12 | No | |
| FV0G18400 | fve | 60S ribosomal protein L7-2 (putative) | transcript=eq;prot=eq;pid=gene05665 | - | scf0513160 | No |
| FV0G18630 | fve | 60S ribosomal protein L7-2 (similar to) | transcript=eq;prot=eq;pid=gene05688 | + | scf0513160 | No |