Gene family  

Sub-families
ORTHO000351 (65 genes in 22 species)
ORTHO016565 (8 genes in 2 species)
ORTHO016725 (8 genes in 4 species)
View all sub-families (8)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (6 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (8 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (18 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (5 genes)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (6 genes)



The gene family HOM001040 has 108 genes in 22 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 108 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G07790 aly name=fgenesh2_kg.352__1__AT3G28500.1;pid=497404;prot=eq;tid=497404 + scaffold_352 No
AL4G12440 aly name=Al_scaffold_0004_1217;pid=869054;prot=eq;tid=900567 - scaffold_4 No
AL4G12450 aly name=Al_scaffold_0004_1218;pid=869055;prot=eq;tid=900568 - scaffold_4 No
AL4G12470 aly name=Al_scaffold_0004_1219;pid=869056;prot=eq;tid=900569 - scaffold_4 No
AL5G07840 aly name=fgenesh2_kg.5__617__AT3G28500.1;pid=484625;prot=eq;tid=484625 + scaffold_5 No
AL5G12370 aly name=fgenesh2_kg.5__862__AT3G44590.1;pid=484870;prot=eq;tid=484870 + scaffold_5 No
AL7G37950 aly name=fgenesh2_kg.7__3414__AT5G40040.1;pid=493981;prot=eq;tid=493981 + scaffold_7 No
AT2G27710 ath 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27720.1); Has 1875 Blast hits to 1874 proteins in 360 species: Archae - 31; Bacteria - 1; Metazoa - 679; Fungi - 442; Plants - 437; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).;60S acidic ribosomal protein family transcript=eq;prot=eq; + 2 No
AT2G27720 ath 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27710.4); Has 1841 Blast hits to 1840 proteins in 328 species: Archae - 0; Bacteria - 0; Metazoa - 762; Fungi - 418; Plants - 417; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).;60S acidic ribosomal protein family transcript=eq;prot=eq; + 2 No
AT3G28500 ath 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G40040.1); Has 1217 Blast hits to 1216 proteins in 338 species: Archae - 72; Bacteria - 1; Metazoa - 371; Fungi - 279; Plants - 263; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).;60S acidic ribosomal protein family transcript=eq;prot=eq; + 3 No
AT3G44590 ath 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27710.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;60S acidic ribosomal protein family transcript=eq;prot=eq; + 3 No
AT5G40040 ath 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosolic ribosome, ribosome; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT3G28500.1); Has 1312 Blast hits to 1311 proteins in 335 species: Archae - 56; Bacteria - 1; Metazoa - 381; Fungi - 288; Plants - 339; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).;60S acidic ribosomal protein family transcript=eq;prot=eq; - 5 No
BD1G44880 bdi pid=Bradi1g44880.1;tid=Bradi1g44880.1;GeneName=Bradi1g44880;transcript=eq;prot=eq + Bd1 No
BD1G53237 bdi pid=Bradi1g53237.1;tid=Bradi1g53237.1;GeneName=Bradi1g53237;transcript=eq;prot=eq + Bd1 No
BD1G53250 bdi pid=Bradi1g53250.1;tid=Bradi1g53250.1;GeneName=Bradi1g53250;transcript=eq;prot=eq + Bd1 No
BD2G23830 bdi pid=Bradi2g23830.1;tid=Bradi2g23830.1;GeneName=Bradi2g23830;transcript=eq;prot=eq - Bd2 No
BD3G07550 bdi pid=Bradi3g07550.1;tid=Bradi3g07550.1;GeneName=Bradi3g07550;transcript=eq;prot=eq - Bd3 No
BD5G09217 bdi pid=Bradi5g09217.1;tid=Bradi5g09217.1;GeneName=Bradi5g09217;transcript=eq;prot=eq - Bd5 No
CP00005G00520 cpa name=evm.TU.supercontig_5.52;pid=evm.TU.supercontig_5.52;prot=eq;transcript=eq + supercontig_5 No
CP00031G00050 cpa name=evm.TU.supercontig_31.5;pid=evm.TU.supercontig_31.5;prot=eq;transcript=eq - supercontig_31 No
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