Gene family  

Sub-families
ORTHO012285 (16 genes in 12 species)
ORTHO013354 (14 genes in 11 species)
ORTHO013621 (13 genes in 11 species)
View all sub-families (19)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (8 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (4 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (10 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (8 genes)
mes
Manihot esculenta (6 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (7 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ptr
Populus trichocarpa (10 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (5 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (9 genes)



The gene family HOM001038 has 108 genes in 19 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 108 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G04920 aly name=scaffold_100520.1;pid=887726;prot=eq;tid=919239 - scaffold_1 No
AL1G28880 aly name=Al_scaffold_0001_2852;pid=881085;prot=eq;tid=912598 - scaffold_1 Yes
AL4G17140 aly name=fgenesh2_kg.4__1202__AT2G32100.1;pid=482142;prot=eq;tid=482142 + scaffold_4 No
AL4G21470 aly name=fgenesh2_kg.4__1639__AT2G36050.1;pid=482579;prot=eq;tid=482579 - scaffold_4 No
AL5G22450 aly name=scaffold_502334.1;pid=906630;prot=eq;tid=938143 - scaffold_5 No
AL6G04200 aly name=scaffold_600427.1;pid=908370;prot=eq;tid=939883 + scaffold_6 No
AL6G04370 aly name=scaffold_600444.1;pid=908387;prot=eq;tid=939900 + scaffold_6 Yes
AL7G29130 aly name=scaffold_703088.1;pid=915346;prot=eq;tid=946859 - scaffold_7 No
AT1G05420 ath ovate family protein 12 (OFP12); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: ovate family protein 16 (TAIR:AT2G32100.1); Has 358 Blast hits to 358 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 358; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;ovate family protein 12 transcript=eq;prot=eq; + 1 No
AT2G32100 ath ovate family protein 16 (OFP16); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: ovate family protein 12 (TAIR:AT1G05420.1); Has 251 Blast hits to 251 proteins in 22 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 235; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;ovate family protein 16 transcript=eq;prot=eq; + 2 No
AT2G36050 ath ovate family protein 15 (OFP15); LOCATED IN: chloroplast; EXPRESSED IN: sepal, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: ovate family protein 18 (TAIR:AT3G52540.1); Has 245 Blast hits to 245 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 244; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;ovate family protein 15 transcript=eq;prot=eq; - 2 No
AT3G52540 ath ovate family protein 18 (OFP18); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: ovate family protein 15 (TAIR:AT2G36050.1); Has 432 Blast hits to 323 proteins in 54 species: Archae - 0; Bacteria - 2; Metazoa - 90; Fungi - 44; Plants - 215; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).;ovate family protein 18 transcript=eq;prot=eq; - 3 No
AT4G14860 ath ovate family protein 11 (OFP11); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: ovate family protein 16 (TAIR:AT2G32100.1); Has 297 Blast hits to 297 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;ovate family protein 11 transcript=eq;prot=eq; + 4 No
AT5G04820 ath ovate family protein 13 (OFP13); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: ovate family protein 15 (TAIR:AT2G36050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;ovate family protein 13 transcript=eq;prot=eq; + 5 No
BD1G74520 bdi pid=Bradi1g74520.1;tid=Bradi1g74520.1;GeneName=Bradi1g74520;transcript=eq;prot=eq + Bd1 No
BD2G55827 bdi pid=Bradi2g55827.1;tid=Bradi2g55827.1;GeneName=Bradi2g55827;transcript=eq;prot=eq + Bd2 No
BD2G55870 bdi pid=Bradi2g55870.1;tid=Bradi2g55870.1;GeneName=Bradi2g55870;transcript=eq;prot=eq + Bd2 No
BD3G35440 bdi pid=Bradi3g35440.1;tid=Bradi3g35440.1;GeneName=Bradi3g35440;transcript=eq;prot=eq + Bd3 No
BD4G42087 bdi pid=Bradi4g42087.1;tid=Bradi4g42087.1;GeneName=Bradi4g42087;transcript=eq;prot=eq - Bd4 No
BD5G09557 bdi pid=Bradi5g09557.1;tid=Bradi5g09557.1;GeneName=Bradi5g09557;transcript=eq;prot=eq + Bd5 No
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