Gene family  

Sub-families
ORTHO010044 (19 genes in 15 species)
ORTHO010725 (18 genes in 14 species)
ORTHO011655 (17 genes in 16 species)
View all sub-families (8)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (30 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (4 genes)
osa
Oryza sativa ssp. japonica (17 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (3 genes)
sbi
Sorghum bicolor (6 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (4 genes)



The gene family HOM001029 has 109 genes in 23 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 109 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G32320 aly name=scaffold_303455.1;pid=899485;prot=eq;tid=930998 + scaffold_3 No
AL3G32330 aly name=scaffold_303456.1;pid=899486;prot=eq;tid=930999 + scaffold_3 No
AT2G07675 ath Ribosomal protein S12/S23 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, small ribosomal subunit, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein S12/S23 (InterPro:IPR006032), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein S12, bacterial-type (InterPro:IPR005679); BEST Arabidopsis thaliana protein match is: Ribosomal protein S12/S23 family protein (TAIR:ATMG00980.1); Has 9383 Blast hits to 9383 proteins in 3360 species: Archae - 13; Bacteria - 5674; Metazoa - 129; Fungi - 135; Plants - 1216; Viruses - 0; Other Eukaryotes - 2216 (source: NCBI BLink).;Ribosomal protein S12/S23 family protein transcript=eq;prot=eq; + 2 No
AT2G07751 ath NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein; FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity; INVOLVED IN: oxidation reduction, mitochondrial electron transport, NADH to ubiquinone; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 (InterPro:IPR000440); BEST Arabidopsis thaliana protein match is: NADH dehydrogenase 3 (TAIR:ATMG00990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein transcript=eq;prot=eq; + 2 No
ATMG00980 ath ribosomal protein L2;Ribosomal protein S12/S23 family protein transcript=eq;prot=eq; - mitochondrial No
ATMG00990 ath NADH dehydrogenase subunit 3;NADH dehydrogenase 3 transcript=eq;prot=eq; - mitochondrial No
BDCG00010 bdi rps12;ribosomal protein S12;protein_id=ACF08620.1; transl_table=11; - chloroplast No
CP00087G01070 cpa name=evm.TU.supercontig_87.107;pid=evm.TU.supercontig_87.107;prot=eq;transcript=eq + supercontig_87 No
CPCG00010 cpa rps12;ribosomal protein S12;protein_id=ABY86806.1; transl_table=11; - chloroplast No
CR02G15300 cre name=pg.chromosome_2_#_990;pid=325197;prot=eq;tid=325204;transcript=eq - chromosome_2 No
CR08G04310 cre name=estExt_fgenesh1_pm.C_210005;pid=24195;prot=eq;tid=24195;transcript=eq + chromosome_8 No
CRCG00930 cre rps12;ribosomal protein S12;protein_id=DAA00960.1; transl_table=11; - chloroplast No
FV5G00650 fve Ribosomal protein S12, mitochondrial (similar to) transcript=eq;prot=eq;pid=gene32275 - LG5 No
GM05G16340 gma 05 pid=16259016;transcript=eq;prot=eq;name=Glyma05g16340.1 - Gm05 No
GM09G06490 gma 09 pid=16274986;transcript=eq;prot=eq;name=Glyma09g06490.1 + Gm09 No
GM11G35880 gma 11 pid=16285528;transcript=eq;prot=eq;name=Glyma11g35880.1 - Gm11 No
GMCG00010 gma rps12;ribosomal protein S12;protein_id=ABC25168.1; transl_table=11; - chloroplast No
LJ0G000090 lja prot=eq;transcript=eq;scaffold=LjSGA_000021;name=LjSGA_000021.1.1 + LjSGA_000021 No
LJ0G000110 lja prot=eq;transcript=eq;scaffold=LjSGA_000022;name=LjSGA_000022.1 + LjSGA_000022 No
LJ0G000130 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_000023;name=LjSGA_000023.1 + LjSGA_000023 No
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