Gene family  

Sub-families
ORTHO000884 (45 genes in 19 species)
ORTHO008270 (22 genes in 17 species)
ORTHO011482 (17 genes in 16 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (4 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (5 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (20 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ptr
Populus trichocarpa (14 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (6 genes)



The gene family HOM001028 has 109 genes in 22 species (9 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 109 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G05730 aly name=scaffold_200581.1;pid=893507;prot=eq;tid=925020 - scaffold_2 No
AL7G10350 aly name=Al_scaffold_0007_980;pid=857481;prot=eq;tid=888994 + scaffold_7 No
AT1G60420 ath Reduce transmission through pollen.;DC1 domain-containing protein transcript=eq;prot=eq; + 1 No
AT4G31240 ath protein kinase C-like zinc finger protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G60420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;protein kinase C-like zinc finger protein transcript=eq;prot=eq; - 4 No
BD1G23520 bdi thioredoxin-disulfide reductase activity (Blast2GO) pid=Bradi1g23520.1;tid=Bradi1g23520.1;GeneName=Bradi1g23520;transcript=eq;prot=eq - Bd1 No
BD1G60260 bdi thioredoxin-disulfide reductase activity (Blast2GO) pid=Bradi1g60260.1;tid=Bradi1g60260.1;GeneName=Bradi1g60260;transcript=eq;prot=eq - Bd1 No
BD2G52317 bdi pid=Bradi2g52317.1;tid=Bradi2g52317.1;GeneName=Bradi2g52317;transcript=eq;prot=eq + Bd2 No
CP00026G02740 cpa name=evm.TU.supercontig_26.274;pid=evm.TU.supercontig_26.274;prot=eq;transcript=eq + supercontig_26 No
CP00069G00520 cpa name=evm.TU.supercontig_69.52;pid=evm.TU.supercontig_69.52;prot=eq;transcript=eq + supercontig_69 No
CP00069G00530 cpa name=evm.TU.supercontig_69.53;pid=evm.TU.supercontig_69.53;prot=eq;transcript=eq + supercontig_69 No
CP00069G00540 cpa name=evm.TU.supercontig_69.54;pid=evm.TU.supercontig_69.54;prot=eq;transcript=eq - supercontig_69 No
CP00148G00070 cpa name=evm.TU.supercontig_148.7;pid=evm.TU.supercontig_148.7;prot=eq;transcript=eq + supercontig_148 No
CR02G04260 cre name=estExt_fgenesh2_kg.C_70172;pid=182094;prot=eq;tid=182094;transcript=eq - chromosome_2 No
CR02G04270 cre name=Chlre2_kg.scaffold_7000395;pid=141568;prot=eq;tid=141568;transcript=eq + chromosome_2 No
CR02G04340 cre name=estExt_fgenesh2_kg.C_70176;pid=182098;prot=eq;tid=182098;transcript=eq + chromosome_2 No
CR16G00010 cre name=fgenesh2_pg.C_scaffold_39000164;pid=177214;prot=eq;tid=177214;transcript=eq + chromosome_16 No
FV0G08610 fve Nucleoredoxin (probable) transcript=eq;prot=eq;pid=gene06228 - scf0513158 No
FV0G08620 fve Nucleoredoxin (probable) transcript=eq;prot=eq;pid=gene06229 - scf0513158 No
FV2G36230 fve Nucleoredoxin (probable) transcript=eq;prot=eq;pid=gene08741 + LG2 No
FV2G38010 fve Nucleoredoxin (probable) transcript=eq;prot=eq;pid=gene08575 - LG2 No
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