Gene family  

Sub-families
ORTHO005162 (26 genes in 23 species)
ORTHO005263 (26 genes in 25 species)
ORTHO010331 (19 genes in 16 species)
View all sub-families (7)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (4 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (8 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (10 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (11 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (8 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (4 genes)



The gene family HOM001020 has 110 genes in 25 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 110 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G22490 aly name=fgenesh2_kg.5__1618__AT3G52570.1;pid=485626;prot=eq;tid=485626 + scaffold_5 No
AL6G32250 aly name=fgenesh2_kg.6__2982__AT4G10030.1;pid=489848;prot=eq;tid=489848 - scaffold_6 No
AL7G36190 aly name=fgenesh2_kg.7__3268__AT5G41470.1;pid=493835;prot=eq;tid=493835 - scaffold_7 No
AT1G71480 ath Nuclear transport factor 2 (NTF2) family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: transport, protein import into nucleus; LOCATED IN: chloroplast thylakoid membrane, intracellular, nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein (TAIR:AT5G41470.1); Has 98 Blast hits to 98 proteins in 29 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).;Nuclear transport factor 2 (NTF2) family protein transcript=eq;prot=eq; + 1 No
AT3G52570 ath alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: intracellular protein transport, GPI anchor metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: PGAP1-like (InterPro:IPR012908); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G10030.1); Has 2648 Blast hits to 2646 proteins in 970 species: Archae - 27; Bacteria - 1772; Metazoa - 182; Fungi - 164; Plants - 106; Viruses - 0; Other Eukaryotes - 397 (source: NCBI BLink).;alpha/beta-Hydrolases superfamily protein transcript=eq;prot=eq; + 3 No
AT4G10030 ath alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G52570.1); Has 3883 Blast hits to 3883 proteins in 1174 species: Archae - 26; Bacteria - 2816; Metazoa - 266; Fungi - 159; Plants - 102; Viruses - 3; Other Eukaryotes - 511 (source: NCBI BLink).;alpha/beta-Hydrolases superfamily protein transcript=eq;prot=eq; - 4 No
AT5G41470 ath Nuclear transport factor 2 (NTF2) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein (TAIR:AT1G71480.1); Has 94 Blast hits to 92 proteins in 28 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).;Nuclear transport factor 2 (NTF2) family protein transcript=eq;prot=eq; + 5 No
BD1G00490 bdi pid=Bradi1g00490.1;tid=Bradi1g00490.1;GeneName=Bradi1g00490;transcript=eq;prot=eq + Bd1 No
BD2G55740 bdi pid=Bradi2g55740.1;tid=Bradi2g55740.1;GeneName=Bradi2g55740;transcript=eq;prot=eq - Bd2 No
BD2G57190 bdi pid=Bradi2g57190.3;tid=Bradi2g57190.3;GeneName=Bradi2g57190;transcript=eq;prot=eq + Bd2 No
BD5G02510 bdi pid=Bradi5g02510.1;tid=Bradi5g02510.1;GeneName=Bradi5g02510;transcript=eq;prot=eq - Bd5 No
CP00021G00650 cpa name=evm.TU.supercontig_21.65;pid=evm.TU.supercontig_21.65;prot=eq;transcript=eq - supercontig_21 No
CP00021G00670 cpa name=evm.TU.supercontig_21.67;pid=evm.TU.supercontig_21.67;prot=eq;transcript=eq - supercontig_21 No
CP00104G00950 cpa name=evm.TU.supercontig_104.95;pid=evm.TU.supercontig_104.95;prot=eq;transcript=eq + supercontig_104 No
CP00180G00250 cpa name=evm.TU.supercontig_180.25;pid=evm.TU.supercontig_180.25;prot=eq;transcript=eq + supercontig_180 No
CR02G03310 cre name=estExt_fgenesh2_pg.C_70317;pid=186610;prot=eq;tid=186610;transcript=eq - chromosome_2 No
CR06G02340 cre name=pasa_Sanger_mRNA27671;pid=400400;prot=eq;tid=418148;transcript=eq - chromosome_6 No
CR08G05360 cre name=e_gwW.21.170.1;pid=118056;prot=eq;tid=118056;transcript=eq + chromosome_8 No
CR08G05410 cre name=Chlre2_kg.scaffold_21000028;pid=148415;prot=eq;tid=148415;transcript=eq + chromosome_8 No
FV2G22760 fve Putative ankyrin repeat protein L120 (probable) transcript=eq;prot=eq;pid=gene32672 - LG2 No
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