Gene family  

Sub-families
ORTHO005155 (26 genes in 15 species)
ORTHO005569 (25 genes in 18 species)
ORTHO028665 (4 genes in 1 species)
View all sub-families (13)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (9 genes)
ath
Arabidopsis thaliana (8 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (3 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (10 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (22 genes)
mes
Manihot esculenta (5 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (5 genes)



The gene family HOM001019 has 110 genes in 20 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 110 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G40270 aly name=scaffold_104277.1;pid=891483;prot=eq;tid=922996 - scaffold_1 No
AL5G19590 aly name=fgenesh2_kg.5__1358__AT3G50080.1;pid=485366;prot=eq;tid=485366 + scaffold_5 No
AL5G19600 aly name=Al_scaffold_0005_1862;pid=866383;prot=eq;tid=897896 + scaffold_5 No
AL5G19610 aly name=fgenesh1_pm.C_scaffold_5001130;pid=323586;prot=eq;tid=323586 + scaffold_5 No
AL6G05130 aly name=fgenesh2_kg.6__481__AT5G05540.1;pid=487347;prot=eq;tid=487347 + scaffold_6 No
AL6G08140 aly name=scaffold_600846.1;pid=908789;prot=eq;tid=940302 - scaffold_6 No
AL6G29730 aly name=Al_scaffold_0006_2869;pid=863360;prot=eq;tid=894873 - scaffold_6 No
AL8G33240 aly name=scaffold_803384.1;pid=919984;prot=eq;tid=951497 + scaffold_8 No
AL8G33250 aly name=scaffold_803385.1;pid=919985;prot=eq;tid=951498 + scaffold_8 No
AT1G47056 ath Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB2,3, and 4. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes.;VIER F-box proteine 1 transcript=eq;prot=eq; - 1 No
AT3G50080 ath Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,3, and 4. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes.;VIER F-box proteine 2 transcript=eq;prot=eq; + 3 No
AT3G50090 ath Exonuclease family protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 1 (TAIR:AT3G50100.1); Has 1396 Blast hits to 1380 proteins in 227 species: Archae - 0; Bacteria - 4; Metazoa - 618; Fungi - 412; Plants - 213; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).;Exonuclease family protein transcript=eq;prot=eq; + 3 No
AT3G50100 ath Encodes an exonuclease that degrades single-stranded small RNAs in vitro and limits the accumulation of small RNAs in vivo.;small RNA degrading nuclease 1 transcript=eq;prot=eq; + 3 No
AT4G07400 ath Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,2,and 4. When levels of all 4 genes are reduced plants show defects in growth and reduced levels of auxin response genes.;VIER F-box proteine 3 transcript=eq;prot=eq; - 4 No
AT5G05540 ath small RNA degrading nuclease 2 (SDN2); FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 3 (TAIR:AT5G67240.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;small RNA degrading nuclease 2 transcript=eq;prot=eq; + 5 No
AT5G67240 ath small RNA degrading nuclease 3 (SDN3); FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 1 (TAIR:AT3G50100.1); Has 2616 Blast hits to 2408 proteins in 300 species: Archae - 3; Bacteria - 109; Metazoa - 996; Fungi - 649; Plants - 362; Viruses - 0; Other Eukaryotes - 497 (source: NCBI BLink).;small RNA degrading nuclease 3 transcript=eq;prot=eq; - 5 No
AT5G67250 ath Encodes an SKP1 interacting partner (SKIP2).Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,2, and 3. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes.;SKP1/ASK1-interacting protein 2 transcript=eq;prot=eq; - 5 No
BD4G08400 bdi F-Box pid=Bradi4g08400.1;tid=Bradi4g08400.1;GeneName=Bradi4g08400;transcript=eq;prot=eq + Bd4 No
BD5G15050 bdi F-Box pid=Bradi5g15050.1;tid=Bradi5g15050.1;GeneName=Bradi5g15050;transcript=eq;prot=eq - Bd5 No
BD5G24250 bdi single-stranded DNA specific 3'-5' exodeoxyribonuclease activity (Blast2GO) pid=Bradi5g24250.1;tid=Bradi5g24250.1;GeneName=Bradi5g24250;transcript=eq;prot=eq + Bd5 No
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