Gene family 
- Id
- HOM001019
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO005155 (26 genes in 15 species)
ORTHO005569 (25 genes in 18 species)
ORTHO028665 (4 genes in 1 species)
View all sub-families (13)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (9 genes)
- ath
- Arabidopsis thaliana (8 genes)
- bdi
- Brachypodium distachyon (3 genes)
- cpa
- Carica papaya (3 genes)
- fve
- Fragaria vesca (4 genes)
- gma
- Glycine max (10 genes)
- lja
- Lotus japonicus (4 genes)
- mdo
- Malus domestica (22 genes)
- mes
- Manihot esculenta (5 genes)
- mtr
- Medicago truncatula (1 gene)
- osa
- Oryza sativa ssp. japonica (6 genes)
- osaindica
- Oryza sativa ssp. indica (6 genes)
- ppa
- Physcomitrella patens (3 genes)
- ptr
- Populus trichocarpa (6 genes)
- rco
- Ricinus communis (4 genes)
- sbi
- Sorghum bicolor (2 genes)
- smo
- Selaginella moellendorffii (4 genes)
- tca
- Theobroma cacao (3 genes)
- vvi
- Vitis vinifera (2 genes)
- zma
- Zea mays (5 genes)
The gene family HOM001019 has 110 genes in 20 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM001019
Page 1 of 6, showing 20 records out of 110 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G40270 | aly | name=scaffold_104277.1;pid=891483;prot=eq;tid=922996 | - | scaffold_1 | No | |
| AL5G19590 | aly | name=fgenesh2_kg.5__1358__AT3G50080.1;pid=485366;prot=eq;tid=485366 | + | scaffold_5 | No | |
| AL5G19600 | aly | name=Al_scaffold_0005_1862;pid=866383;prot=eq;tid=897896 | + | scaffold_5 | No | |
| AL5G19610 | aly | name=fgenesh1_pm.C_scaffold_5001130;pid=323586;prot=eq;tid=323586 | + | scaffold_5 | No | |
| AL6G05130 | aly | name=fgenesh2_kg.6__481__AT5G05540.1;pid=487347;prot=eq;tid=487347 | + | scaffold_6 | No | |
| AL6G08140 | aly | name=scaffold_600846.1;pid=908789;prot=eq;tid=940302 | - | scaffold_6 | No | |
| AL6G29730 | aly | name=Al_scaffold_0006_2869;pid=863360;prot=eq;tid=894873 | - | scaffold_6 | No | |
| AL8G33240 | aly | name=scaffold_803384.1;pid=919984;prot=eq;tid=951497 | + | scaffold_8 | No | |
| AL8G33250 | aly | name=scaffold_803385.1;pid=919985;prot=eq;tid=951498 | + | scaffold_8 | No | |
| AT1G47056 | ath | Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB2,3, and 4. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes.;VIER F-box proteine 1 | transcript=eq;prot=eq; | - | 1 | No |
| AT3G50080 | ath | Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,3, and 4. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes.;VIER F-box proteine 2 | transcript=eq;prot=eq; | + | 3 | No |
| AT3G50090 | ath | Exonuclease family protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 1 (TAIR:AT3G50100.1); Has 1396 Blast hits to 1380 proteins in 227 species: Archae - 0; Bacteria - 4; Metazoa - 618; Fungi - 412; Plants - 213; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).;Exonuclease family protein | transcript=eq;prot=eq; | + | 3 | No |
| AT3G50100 | ath | Encodes an exonuclease that degrades single-stranded small RNAs in vitro and limits the accumulation of small RNAs in vivo.;small RNA degrading nuclease 1 | transcript=eq;prot=eq; | + | 3 | No |
| AT4G07400 | ath | Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,2,and 4. When levels of all 4 genes are reduced plants show defects in growth and reduced levels of auxin response genes.;VIER F-box proteine 3 | transcript=eq;prot=eq; | - | 4 | No |
| AT5G05540 | ath | small RNA degrading nuclease 2 (SDN2); FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 3 (TAIR:AT5G67240.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;small RNA degrading nuclease 2 | transcript=eq;prot=eq; | + | 5 | No |
| AT5G67240 | ath | small RNA degrading nuclease 3 (SDN3); FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 1 (TAIR:AT3G50100.1); Has 2616 Blast hits to 2408 proteins in 300 species: Archae - 3; Bacteria - 109; Metazoa - 996; Fungi - 649; Plants - 362; Viruses - 0; Other Eukaryotes - 497 (source: NCBI BLink).;small RNA degrading nuclease 3 | transcript=eq;prot=eq; | - | 5 | No |
| AT5G67250 | ath | Encodes an SKP1 interacting partner (SKIP2).Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,2, and 3. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes.;SKP1/ASK1-interacting protein 2 | transcript=eq;prot=eq; | - | 5 | No |
| BD4G08400 | bdi | F-Box | pid=Bradi4g08400.1;tid=Bradi4g08400.1;GeneName=Bradi4g08400;transcript=eq;prot=eq | + | Bd4 | No |
| BD5G15050 | bdi | F-Box | pid=Bradi5g15050.1;tid=Bradi5g15050.1;GeneName=Bradi5g15050;transcript=eq;prot=eq | - | Bd5 | No |
| BD5G24250 | bdi | single-stranded DNA specific 3'-5' exodeoxyribonuclease activity (Blast2GO) | pid=Bradi5g24250.1;tid=Bradi5g24250.1;GeneName=Bradi5g24250;transcript=eq;prot=eq | + | Bd5 | No |