Gene family  

Sub-families
ORTHO001080 (42 genes in 20 species)
ORTHO005972 (25 genes in 18 species)
ORTHO009133 (20 genes in 12 species)
View all sub-families (7)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (4 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (14 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (11 genes)
mes
Manihot esculenta (6 genes)
mtr
Medicago truncatula (5 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (5 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (7 genes)



The gene family HOM001012 has 111 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 111 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G08610 aly name=fgenesh2_kg.1__932__AT1G08990.1;pid=470978;prot=eq;tid=470978 + scaffold_1 No
AL1G51990 aly name=fgenesh1_pg.C_scaffold_1004341;pid=337776;prot=eq;tid=337776 + scaffold_1 No
AL2G26100 aly name=fgenesh2_kg.2__2006__AT1G77130.1;pid=476876;prot=eq;tid=476876 - scaffold_2 No
AL3G20210 aly name=fgenesh2_kg.3__2073__AT3G18660.2;pid=479372;prot=eq;tid=479372 - scaffold_3 No
AL7G07910 aly name=fgenesh1_pm.C_scaffold_7000632;pid=328405;prot=eq;tid=328405 + scaffold_7 No
AT1G08990 ath plant glycogenin-like starch initiation protein 5 (PGSIP5); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 4 (TAIR:AT1G54940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;plant glycogenin-like starch initiation protein 5 transcript=eq;prot=eq; + 1 No
AT1G54940 ath plant glycogenin-like starch initiation protein 4 (PGSIP4); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 5 (TAIR:AT1G08990.1); Has 1335 Blast hits to 1329 proteins in 289 species: Archae - 0; Bacteria - 103; Metazoa - 257; Fungi - 309; Plants - 506; Viruses - 75; Other Eukaryotes - 85 (source: NCBI BLink).;plant glycogenin-like starch initiation protein 4 transcript=eq;prot=eq; + 1 No
AT1G77130 ath plant glycogenin-like starch initiation protein 2 (PGSIP2); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 1 (TAIR:AT3G18660.3); Has 1471 Blast hits to 1463 proteins in 343 species: Archae - 0; Bacteria - 240; Metazoa - 259; Fungi - 287; Plants - 508; Viruses - 75; Other Eukaryotes - 102 (source: NCBI BLink).;plant glycogenin-like starch initiation protein 2 transcript=eq;prot=eq; - 1 No
AT3G18660 ath Plants expressing an RNAi construct specifically targeting PGSIP1 was shown to have a dramatically reduced amount of starch.;plant glycogenin-like starch initiation protein 1 transcript=eq;prot=eq; - 3 No
AT4G33330 ath plant glycogenin-like starch initiation protein 3 (PGSIP3); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, sperm cell, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 1 (TAIR:AT3G18660.1); Has 1395 Blast hits to 1389 proteins in 311 species: Archae - 0; Bacteria - 157; Metazoa - 262; Fungi - 295; Plants - 509; Viruses - 75; Other Eukaryotes - 97 (source: NCBI BLink).;plant glycogenin-like starch initiation protein 3 transcript=eq;prot=eq; - 4 No
BD1G72350 bdi Putative glycogenin-like starch initiation protein, CAZy family GT8 pid=Bradi1g72350.1;tid=Bradi1g72350.1;GeneName=Bradi1g72350;Name=BdPGSIP4;transcript=eq;prot=eq - Bd1 No
BD2G24737 bdi pid=Bradi2g24737.1;tid=Bradi2g24737.1;GeneName=Bradi2g24737;transcript=eq;prot=eq + Bd2 No
BD2G56810 bdi Putative glycogenin-like starch initiation protein, CAZy family GT8 pid=Bradi2g56810.1;tid=Bradi2g56810.1;GeneName=Bradi2g56810;Name=BdPGSIP2;transcript=eq;prot=eq + Bd2 No
BD3G45800 bdi Putative glycogenin-like starch initiation protein, CAZy family GT8 pid=Bradi3g45800.1;tid=Bradi3g45800.1;GeneName=Bradi3g45800;Name=BdPGSIP1;transcript=eq;prot=eq - Bd3 No
BD5G27680 bdi pid=Bradi5g27680.1;tid=Bradi5g27680.1;GeneName=Bradi5g27680;transcript=eq;prot=eq - Bd5 No
CP00042G01170 cpa name=evm.TU.supercontig_42.117;pid=evm.TU.supercontig_42.117;prot=eq;transcript=eq + supercontig_42 No
CP00048G00450 cpa name=evm.TU.supercontig_48.45;pid=evm.TU.supercontig_48.45;prot=eq;transcript=eq + supercontig_48 No
CP00049G00120 cpa name=evm.TU.supercontig_49.12;pid=evm.TU.supercontig_49.12;prot=eq;transcript=eq + supercontig_49 No
CP00049G00610 cpa name=evm.TU.supercontig_49.61;pid=evm.TU.supercontig_49.61;prot=eq;transcript=eq + supercontig_49 No
FV1G20870 fve Glycogenin-2 (GN-2) (probable) transcript=eq;prot=eq;pid=gene17874 + LG1 No
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