Gene family 
- Id
- HOM001012
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO001080 (42 genes in 20 species)
ORTHO005972 (25 genes in 18 species)
ORTHO009133 (20 genes in 12 species)
View all sub-families (7)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (5 genes)
- ath
- Arabidopsis thaliana (5 genes)
- bdi
- Brachypodium distachyon (5 genes)
- cpa
- Carica papaya (4 genes)
- fve
- Fragaria vesca (4 genes)
- gma
- Glycine max (14 genes)
- lja
- Lotus japonicus (6 genes)
- mdo
- Malus domestica (11 genes)
- mes
- Manihot esculenta (6 genes)
- mtr
- Medicago truncatula (5 genes)
- osa
- Oryza sativa ssp. japonica (4 genes)
- osaindica
- Oryza sativa ssp. indica (4 genes)
- ppa
- Physcomitrella patens (2 genes)
- ptr
- Populus trichocarpa (6 genes)
- rco
- Ricinus communis (4 genes)
- sbi
- Sorghum bicolor (7 genes)
- smo
- Selaginella moellendorffii (3 genes)
- tca
- Theobroma cacao (5 genes)
- vvi
- Vitis vinifera (4 genes)
- zma
- Zea mays (7 genes)
The gene family HOM001012 has 111 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM001012
Page 1 of 6, showing 20 records out of 111 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G08610 | aly | name=fgenesh2_kg.1__932__AT1G08990.1;pid=470978;prot=eq;tid=470978 | + | scaffold_1 | No | |
| AL1G51990 | aly | name=fgenesh1_pg.C_scaffold_1004341;pid=337776;prot=eq;tid=337776 | + | scaffold_1 | No | |
| AL2G26100 | aly | name=fgenesh2_kg.2__2006__AT1G77130.1;pid=476876;prot=eq;tid=476876 | - | scaffold_2 | No | |
| AL3G20210 | aly | name=fgenesh2_kg.3__2073__AT3G18660.2;pid=479372;prot=eq;tid=479372 | - | scaffold_3 | No | |
| AL7G07910 | aly | name=fgenesh1_pm.C_scaffold_7000632;pid=328405;prot=eq;tid=328405 | + | scaffold_7 | No | |
| AT1G08990 | ath | plant glycogenin-like starch initiation protein 5 (PGSIP5); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 4 (TAIR:AT1G54940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;plant glycogenin-like starch initiation protein 5 | transcript=eq;prot=eq; | + | 1 | No |
| AT1G54940 | ath | plant glycogenin-like starch initiation protein 4 (PGSIP4); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 5 (TAIR:AT1G08990.1); Has 1335 Blast hits to 1329 proteins in 289 species: Archae - 0; Bacteria - 103; Metazoa - 257; Fungi - 309; Plants - 506; Viruses - 75; Other Eukaryotes - 85 (source: NCBI BLink).;plant glycogenin-like starch initiation protein 4 | transcript=eq;prot=eq; | + | 1 | No |
| AT1G77130 | ath | plant glycogenin-like starch initiation protein 2 (PGSIP2); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 1 (TAIR:AT3G18660.3); Has 1471 Blast hits to 1463 proteins in 343 species: Archae - 0; Bacteria - 240; Metazoa - 259; Fungi - 287; Plants - 508; Viruses - 75; Other Eukaryotes - 102 (source: NCBI BLink).;plant glycogenin-like starch initiation protein 2 | transcript=eq;prot=eq; | - | 1 | No |
| AT3G18660 | ath | Plants expressing an RNAi construct specifically targeting PGSIP1 was shown to have a dramatically reduced amount of starch.;plant glycogenin-like starch initiation protein 1 | transcript=eq;prot=eq; | - | 3 | No |
| AT4G33330 | ath | plant glycogenin-like starch initiation protein 3 (PGSIP3); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, sperm cell, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 1 (TAIR:AT3G18660.1); Has 1395 Blast hits to 1389 proteins in 311 species: Archae - 0; Bacteria - 157; Metazoa - 262; Fungi - 295; Plants - 509; Viruses - 75; Other Eukaryotes - 97 (source: NCBI BLink).;plant glycogenin-like starch initiation protein 3 | transcript=eq;prot=eq; | - | 4 | No |
| BD1G72350 | bdi | Putative glycogenin-like starch initiation protein, CAZy family GT8 | pid=Bradi1g72350.1;tid=Bradi1g72350.1;GeneName=Bradi1g72350;Name=BdPGSIP4;transcript=eq;prot=eq | - | Bd1 | No |
| BD2G24737 | bdi | pid=Bradi2g24737.1;tid=Bradi2g24737.1;GeneName=Bradi2g24737;transcript=eq;prot=eq | + | Bd2 | No | |
| BD2G56810 | bdi | Putative glycogenin-like starch initiation protein, CAZy family GT8 | pid=Bradi2g56810.1;tid=Bradi2g56810.1;GeneName=Bradi2g56810;Name=BdPGSIP2;transcript=eq;prot=eq | + | Bd2 | No |
| BD3G45800 | bdi | Putative glycogenin-like starch initiation protein, CAZy family GT8 | pid=Bradi3g45800.1;tid=Bradi3g45800.1;GeneName=Bradi3g45800;Name=BdPGSIP1;transcript=eq;prot=eq | - | Bd3 | No |
| BD5G27680 | bdi | pid=Bradi5g27680.1;tid=Bradi5g27680.1;GeneName=Bradi5g27680;transcript=eq;prot=eq | - | Bd5 | No | |
| CP00042G01170 | cpa | name=evm.TU.supercontig_42.117;pid=evm.TU.supercontig_42.117;prot=eq;transcript=eq | + | supercontig_42 | No | |
| CP00048G00450 | cpa | name=evm.TU.supercontig_48.45;pid=evm.TU.supercontig_48.45;prot=eq;transcript=eq | + | supercontig_48 | No | |
| CP00049G00120 | cpa | name=evm.TU.supercontig_49.12;pid=evm.TU.supercontig_49.12;prot=eq;transcript=eq | + | supercontig_49 | No | |
| CP00049G00610 | cpa | name=evm.TU.supercontig_49.61;pid=evm.TU.supercontig_49.61;prot=eq;transcript=eq | + | supercontig_49 | No | |
| FV1G20870 | fve | Glycogenin-2 (GN-2) (probable) | transcript=eq;prot=eq;pid=gene17874 | + | LG1 | No |