Gene family  

Sub-families
ORTHO001811 (35 genes in 20 species)
ORTHO003546 (29 genes in 22 species)
ORTHO012731 (15 genes in 15 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (5 genes)
gma
Glycine max (12 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (10 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (6 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (7 genes)



The gene family HOM001011 has 111 genes in 25 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 111 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G18520 aly name=scaffold_101960.1;pid=889166;prot=eq;tid=920679 + scaffold_1 No
AL2G21620 aly name=fgenesh2_kg.2__1548__AT1G72820.1;pid=476418;prot=eq;tid=476418 + scaffold_2 No
AL6G15480 aly name=scaffold_601597.1;pid=909540;prot=eq;tid=941053 + scaffold_6 No
AL6G26480 aly name=scaffold_602751.1;pid=910694;prot=eq;tid=942207 + scaffold_6 No
AT1G72820 ath Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT5G26200.1); Has 20856 Blast hits to 12399 proteins in 415 species: Archae - 0; Bacteria - 0; Metazoa - 8678; Fungi - 5994; Plants - 4095; Viruses - 0; Other Eukaryotes - 2089 (source: NCBI BLink).;Mitochondrial substrate carrier family protein transcript=eq;prot=eq; + 1 No
AT5G15640 ath Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrion, mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT1G72820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Mitochondrial substrate carrier family protein transcript=eq;prot=eq; + 5 No
AT5G26200 ath Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT1G72820.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Mitochondrial substrate carrier family protein transcript=eq;prot=eq; + 5 No
BD1G08301 bdi pid=Bradi1g08301.1;tid=Bradi1g08301.1;GeneName=Bradi1g08301;transcript=eq;prot=eq - Bd1 No
BD1G72940 bdi S-adenosylmethionine transmembrane transporter activity, iron ion transmembrane transporter activity (Blast2GO) pid=Bradi1g72940.1;tid=Bradi1g72940.1;GeneName=Bradi1g72940;transcript=eq;prot=eq - Bd1 No
BD2G12390 bdi L-glutamate transmembrane transporter activity, L-aspartate transmembrane transporter activity (Blast2GO) pid=Bradi2g12390.1;tid=Bradi2g12390.1;GeneName=Bradi2g12390;transcript=eq;prot=eq + Bd2 No
BD4G31560 bdi acidic amino acid transmembrane transporter activity, di-, tri-valent inorganic cation transmembrane transporter activity, L-amino acid transmembrane transporter activity (Blast2GO) pid=Bradi4g31560.1;tid=Bradi4g31560.1;GeneName=Bradi4g31560;transcript=eq;prot=eq - Bd4 No
CP00012G02180 cpa name=evm.TU.supercontig_12.218;pid=evm.TU.supercontig_12.218;prot=eq;transcript=eq - supercontig_12 No
CP00012G02190 cpa name=evm.TU.supercontig_12.219;pid=evm.TU.supercontig_12.219;prot=eq;transcript=eq - supercontig_12 No
CP00014G02050 cpa name=evm.TU.supercontig_14.205;pid=evm.TU.supercontig_14.205;prot=eq;transcript=eq + supercontig_14 Yes
CP00014G02060 cpa name=evm.TU.supercontig_14.206;pid=evm.TU.supercontig_14.206;prot=eq;transcript=eq - supercontig_14 No
CP00025G00950 cpa name=evm.TU.supercontig_25.95;pid=evm.TU.supercontig_25.95;prot=eq;transcript=eq + supercontig_25 No
CR02G03930 cre name=e_gwH.7.332.1;pid=96857;prot=eq;tid=96857;transcript=eq - chromosome_2 No
FV0G15040 fve Solute carrier family 25 member 44 (probable) transcript=eq;prot=eq;pid=gene07517 + scf0513160 No
FV4G19380 fve Solute carrier family 25 member 44 (probable) transcript=eq;prot=eq;pid=gene22999 - LG4 No
FV5G21590 fve Solute carrier family 25 member 40 (probable) transcript=eq;prot=eq;pid=gene12159 + LG5 No
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