Gene family  

Sub-families
ORTHO000379 (63 genes in 17 species)
ORTHO005066 (26 genes in 19 species)
ORTHO049041 (2 genes in 2 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (6 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (6 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (7 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (9 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (12 genes)



The gene family HOM001006 has 112 genes in 22 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 112 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G28560 aly name=fgenesh2_kg.1__2902__AT1G27440.1;pid=472948;prot=eq;tid=472948 - scaffold_1 No
AL4G11970 aly name=fgenesh2_kg.4__758__AT2G28110.1;pid=481698;prot=eq;tid=481698 + scaffold_4 No
AL5G05530 aly name=scaffold_500586.1;pid=904882;prot=eq;tid=936395 + scaffold_5 No
AL5G21530 aly name=scaffold_502243.1;pid=906539;prot=eq;tid=938052 - scaffold_5 No
AL6G22680 aly name=fgenesh2_kg.6__2283__AT5G22940.1;pid=489149;prot=eq;tid=489149 + scaffold_6 No
AL8G28110 aly name=fgenesh2_kg.8__2168__AT5G61840.1;pid=496352;prot=eq;tid=496352 - scaffold_8 No
AT1G27440 ath GUT2; FUNCTIONS IN: glucuronoxylan glucuronosyltransferase activity, catalytic activity; INVOLVED IN: secondary cell wall biogenesis, glucuronoxylan biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G61840.1); Has 1460 Blast hits to 1436 proteins in 120 species: Archae - 0; Bacteria - 14; Metazoa - 310; Fungi - 4; Plants - 1003; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).;Exostosin family protein transcript=eq;prot=eq; - 1 No
AT2G28110 ath Homolog to AT5G22940, a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase. Protein has a domain that shares significant similarity with the pfam03016 domain. It is expressed specifically in developing vessels and fiber cells, and FRA8 is targeted to Golgi. Mutants have irregular xylem formation, reduced cellulose levels and plants are smaller than normal siblings.;Exostosin family protein transcript=eq;prot=eq; - 2 No
AT5G22940 ath Homolog of FRA8 (AT2G28110), a member of a member of glycosyltransferase family 47; exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase.;FRA8 homolog transcript=eq;prot=eq; + 5 No
AT5G61840 ath GUT1; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT1G27440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Exostosin family protein transcript=eq;prot=eq; - 5 No
BD1G78027 bdi pid=Bradi1g78027.1;tid=Bradi1g78027.1;GeneName=Bradi1g78027;transcript=eq;prot=eq - Bd1 No
BD2G59380 bdi Similar to glucuronyltransferase. CAZy family GT47 pid=Bradi2g59380.1;tid=Bradi2g59380.1;GeneName=Bradi2g59380;Name=BdGT47D5;transcript=eq;prot=eq - Bd2 No
BD2G59400 bdi Similar to glucuronyltransferase. CAZy family GT47 pid=Bradi2g59400.1;tid=Bradi2g59400.1;GeneName=Bradi2g59400;Name=BdGT47D3;transcript=eq;prot=eq - Bd2 No
BD2G59410 bdi Similar to glucuronyltransferase. CAZy family GT47 pid=Bradi2g59410.1;tid=Bradi2g59410.1;GeneName=Bradi2g59410;Name=BdGT47D4;transcript=eq;prot=eq - Bd2 No
BD3G32610 bdi Similar to glucuronyltransferase. CAZy family GT47 pid=Bradi3g32610.1;tid=Bradi3g32610.1;GeneName=Bradi3g32610;Name=BdGT47D2;transcript=eq;prot=eq - Bd3 No
BD3G44420 bdi Similar to glucuronyltransferase. CAZy family GT47 pid=Bradi3g44420.1;tid=Bradi3g44420.1;GeneName=Bradi3g44420;Name=BdGT47D6;transcript=eq;prot=eq + Bd3 No
BD5G08400 bdi Similar to glucuronyltransferase. CAZy family GT47 pid=Bradi5g08400.1;tid=Bradi5g08400.1;GeneName=Bradi5g08400;Name=BdGT47D7;transcript=eq;prot=eq + Bd5 No
CP00001G00130 cpa name=evm.TU.supercontig_1.13;pid=evm.TU.supercontig_1.13;prot=eq;transcript=eq + supercontig_1 No
CP00013G01700 cpa name=evm.TU.supercontig_13.170;pid=evm.TU.supercontig_13.170;prot=eq;transcript=eq + supercontig_13 No
CP00038G00590 cpa name=evm.TU.supercontig_38.60;pid=evm.TU.supercontig_38.60;prot=eq;transcript=eq + supercontig_38 No
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