Gene family  

Sub-families
ORTHO006808 (24 genes in 22 species)
ORTHO006849 (24 genes in 20 species)
ORTHO009545 (20 genes in 18 species)
View all sub-families (12)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (4 genes)
gma
Glycine max (10 genes)
lja
Lotus japonicus (9 genes)
mdo
Malus domestica (8 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (5 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (5 genes)



The gene family HOM000993 has 113 genes in 25 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 113 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G08940 aly name=fgenesh2_kg.6__873__AT5G09290.1;pid=487739;prot=eq;tid=487739 + scaffold_6 No
AL6G37060 aly name=fgenesh2_kg.6__3292__AT4G05090.1;pid=490158;prot=eq;tid=490158 + scaffold_6 No
AL8G19630 aly name=fgenesh2_kg.8__1335__AT5G54390.1;pid=495519;prot=eq;tid=495519 + scaffold_8 No
AL8G30630 aly name=fgenesh2_kg.8__2407__AT5G63980.1;pid=496591;prot=eq;tid=496591 + scaffold_8 No
AL8G30640 aly name=fgenesh2_kg.8__2409__AT5G63990.1;pid=496593;prot=eq;tid=496593 + scaffold_8 No
AL8G30650 aly name=fgenesh2_kg.8__2410__AT5G64000.1;pid=496594;prot=eq;tid=496594 + scaffold_8 No
AT4G05090 ath Inositol monophosphatase family protein; FUNCTIONS IN: 3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: sulfur metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase (InterPro:IPR000760), Inositol monophosphatase, metal-binding site (InterPro:IPR020583); BEST Arabidopsis thaliana protein match is: Inositol monophosphatase family protein (TAIR:AT5G64000.1); Has 5084 Blast hits to 5082 proteins in 1369 species: Archae - 38; Bacteria - 2832; Metazoa - 92; Fungi - 221; Plants - 243; Viruses - 0; Other Eukaryotes - 1658 (source: NCBI BLink).;Inositol monophosphatase family protein transcript=eq;prot=eq; + 4 No
AT5G09290 ath Inositol monophosphatase family protein; FUNCTIONS IN: 3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: sulfur metabolic process; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase (InterPro:IPR000760), 3(2),5 -bisphosphate nucleotidase HAL2 (InterPro:IPR006239), Inositol monophosphatase, metal-binding site (InterPro:IPR020583); BEST Arabidopsis thaliana protein match is: Inositol monophosphatase family protein (TAIR:AT5G64000.1); Has 10680 Blast hits to 10676 proteins in 1898 species: Archae - 61; Bacteria - 6716; Metazoa - 401; Fungi - 268; Plants - 330; Viruses - 0; Other Eukaryotes - 2904 (source: NCBI BLink).;Inositol monophosphatase family protein transcript=eq;prot=eq; + 5 No
AT5G54390 ath Encodes a 3'-phosphoadenosine-5'-phosphate (PAP) phosphatase that is sensitive to physiological concentrations of Na+. It does not also act as inositol polyphosphate 1-phosphatases, which other members of the HAL2-like family do. It is proposed that AHL acts in concert with sulphotransferases to prevent both the toxicity of PAP on RNA processing enzymes as well as the product inhibition of PAP on sulphate conjugation.;HAL2-like transcript=eq;prot=eq; + 5 No
AT5G63980 ath Encodes a bifunctional protein that has 3'(2'),5'-bisphosphate nucleotidase and inositol polyphosphate 1-phosphatase activities and rescues sulfur assimilation mutants in yeast. It is involved in the response to cold, drought (negative regulator of drought tolerance), and ABA. Mutants in this gene exhibit enhanced induction of stress genes in response to cold, ABA, salt and dehydration due to higher accumulation of the second messenger, inositol (1,4,5)- triphosphate (IP(3)). Involved in degradation of small mRNAs. Mutants also affect the accumulation of miRNA target cleavage products. Regulates light-dependent repression of hypocotyl elongation and flowering time via its 3'(2'),5'-bisphosphate nucleotidase activity.;Inositol monophosphatase family protein transcript=eq;prot=eq; + 5 No
AT5G63990 ath Inositol monophosphatase family protein; FUNCTIONS IN: 3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: sulfur metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase (InterPro:IPR000760), 3(2),5 -bisphosphate nucleotidase HAL2 (InterPro:IPR006239); BEST Arabidopsis thaliana protein match is: Inositol monophosphatase family protein (TAIR:AT5G64000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Inositol monophosphatase family protein transcript=eq;prot=eq; + 5 No
AT5G64000 ath 3'(2'),5'-bisphosphate nucleotidase;Inositol monophosphatase family protein transcript=eq;prot=eq; + 5 No
BD1G24900 bdi inositol or phosphatidylinositol phosphatase activity (Blast2GO) pid=Bradi1g24900.1;tid=Bradi1g24900.1;GeneName=Bradi1g24900;transcript=eq;prot=eq - Bd1 No
BD3G54660 bdi inositol-1,4-bisphosphate 1-phosphatase activity (Blast2GO) pid=Bradi3g54660.1;tid=Bradi3g54660.1;GeneName=Bradi3g54660;transcript=eq;prot=eq - Bd3 No
BD4G40860 bdi inositol-1,4-bisphosphate 1-phosphatase activity (Blast2GO) pid=Bradi4g40860.1;tid=Bradi4g40860.1;GeneName=Bradi4g40860;transcript=eq;prot=eq + Bd4 No
CP00027G01010 cpa name=evm.TU.supercontig_27.102;pid=evm.TU.supercontig_27.102;prot=eq;transcript=eq - supercontig_27 No
CP00027G01340 cpa name=evm.TU.supercontig_27.135;pid=evm.TU.supercontig_27.135;prot=eq;transcript=eq + supercontig_27 No
CP00042G01630 cpa name=evm.TU.supercontig_42.163;pid=evm.TU.supercontig_42.163;prot=eq;transcript=eq + supercontig_42 No
CP02554G00010 cpa name=evm.TU.supercontig_2554.1;pid=evm.TU.supercontig_2554.1;prot=eq;transcript=eq + supercontig_2554 No
CR01G06280 cre name=Chlre2_kg.scaffold_1000357;pid=146533;prot=eq;tid=146533;transcript=eq - chromosome_1 No
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