Gene family  

Sub-families
ORTHO003963 (28 genes in 25 species)
ORTHO007802 (22 genes in 19 species)
ORTHO009924 (19 genes in 19 species)
View all sub-families (13)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (16 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (14 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (6 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (6 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (4 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (3 genes)



The gene family HOM000982 has 115 genes in 25 species (14 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 115 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G01090 aly name=fgenesh2_kg.2__87__AT1G63990.1;pid=474957;prot=eq;tid=474957 + scaffold_2 No
AL3G13630 aly name=Al_scaffold_0003_1340;pid=872699;prot=eq;tid=904212 - scaffold_3 No
AL5G12240 aly name=scaffold_501265.1;pid=905561;prot=eq;tid=937074 + scaffold_5 Yes
AL6G01920 aly name=fgenesh2_kg.6__192__AT5G02820.1;pid=487058;prot=eq;tid=487058 + scaffold_6 No
AL7G36310 aly name=scaffold_703812.1;pid=916070;prot=eq;tid=947583 + scaffold_7 Yes
AT1G63990 ath Encodes AtSPO11-2, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA). Required for meiotic recombination. Plants homozygous for atspo11-2 exhibit a severe sterility phenotype. Both male and female meiosis are severely disrupted in the atspo11-2 mutant, and this is associated with severe defects in synapsis during the first meiotic division and reduced meiotic recombination. AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. Required for double-strand break induction.;sporulation 11-2 transcript=eq;prot=eq; - 1 No
AT3G13170 ath Encodes AtSPO11-1, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA). Required for meiotic recombination. AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. AtSPO11-1 accumulates in foci in early G2. At 1 h post-S phase, no foci are observed, but by 3 h a majority (80%) of meiocytes at this time point contain >50 foci. However, by 5 h, AtSPO11-1 foci are no longer detectable. This suggests that the protein undergoes a rapid cycle of accumulation and disappearance in meiocytes over a period of between 1 and 5 h post-S phase.;Spo11/DNA topoisomerase VI, subunit A protein transcript=eq;prot=eq; - 3 No
AT5G02820 ath Involved in the patterning and shape of leaf trichomes. Encodes the DNA topoisomerase VI SPO11-3, involved in endoreduplication;Spo11/DNA topoisomerase VI, subunit A protein transcript=eq;prot=eq; + 5 No
BD1G08390 bdi ATP binding (Blast2GO) pid=Bradi1g08390.1;tid=Bradi1g08390.1;GeneName=Bradi1g08390;transcript=eq;prot=eq - Bd1 No
BD1G65870 bdi ATP binding (Blast2GO) pid=Bradi1g65870.1;tid=Bradi1g65870.1;GeneName=Bradi1g65870;transcript=eq;prot=eq - Bd1 No
BD2G18320 bdi pid=Bradi2g18320.1;tid=Bradi2g18320.1;GeneName=Bradi2g18320;transcript=eq;prot=eq - Bd2 Yes
BD3G16580 bdi ATP binding (Blast2GO) pid=Bradi3g16580.1;tid=Bradi3g16580.1;GeneName=Bradi3g16580;transcript=eq;prot=eq + Bd3 No
CP00012G01620 cpa name=evm.TU.supercontig_12.162;pid=evm.TU.supercontig_12.162;prot=eq;transcript=eq + supercontig_12 No
CP00012G01630 cpa name=evm.TU.supercontig_12.163;pid=evm.TU.supercontig_12.163;prot=eq;transcript=eq + supercontig_12 No
CP00045G00320 cpa name=evm.TU.supercontig_45.32;pid=evm.TU.supercontig_45.32;prot=eq;transcript=eq + supercontig_45 No
CP02704G00020 cpa name=evm.TU.supercontig_2704.2;pid=evm.TU.supercontig_2704.2;prot=eq;transcript=eq + supercontig_2704 No
CR02G02490 cre name=estExt_GenewiseW_1.C_70074;pid=76283;prot=eq;tid=76283;transcript=eq + chromosome_2 No
CR14G02450 cre name=fgenesh2_pg.C_scaffold_1000914;pid=172293;prot=eq;tid=172293;transcript=eq - chromosome_14 No
FV0G49350 fve DNA topoisomerase 6 subunit A (AtTOP6A) (probable) transcript=eq;prot=eq;pid=gene00170 + scf0512944 No
FV1G04190 fve DNA topoisomerase 6 subunit A (AtTOP6A) (probable) transcript=eq;prot=eq;pid=gene30790 + LG1 No
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