Gene family  

Sub-families
ORTHO003635 (29 genes in 24 species)
ORTHO007511 (23 genes in 21 species)
ORTHO011399 (17 genes in 16 species)
View all sub-families (9)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (33 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (8 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (4 genes)



The gene family HOM000976 has 115 genes in 24 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 115 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G09880 aly name=scaffold_66400002.1;pid=920872;prot=eq;tid=952385 + scaffold_664 No
AL5G17330 aly name=fgenesh2_kg.5__1199__AT3G48470.1;pid=485207;prot=eq;tid=485207 + scaffold_5 No
AL8G14310 aly name=fgenesh2_kg.8__908__AT5G50320.1;pid=495092;prot=eq;tid=495092 - scaffold_8 No
AL8G29880 aly name=fgenesh2_kg.8__2328__AT5G63290.1;pid=496512;prot=eq;tid=496512 - scaffold_8 No
AT3G48470 ath EMBRYO DEFECTIVE 2423 (EMB2423); CONTAINS InterPro DOMAIN/s: Telomere length regulation protein (InterPro:IPR019337); Has 246 Blast hits to 237 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 75; Plants - 52; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).;embryo defective 2423 transcript=eq;prot=eq; + 3 No
AT5G50320 ath A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1–ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate. Two lines with RNAi constructs directed against HAG3 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation.;radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein transcript=eq;prot=eq; - 5 No
AT5G63290 ath Radical SAM superfamily protein; FUNCTIONS IN: oxidoreductase activity, iron-sulfur cluster binding, coproporphyrinogen oxidase activity, catalytic activity; INVOLVED IN: oxidation reduction, porphyrin biosynthetic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Putative oxygen-independent coproporphyrinogen III oxidase (InterPro:IPR004559), HemN, C-terminal (InterPro:IPR010723), Radical SAM (InterPro:IPR007197); Has 10146 Blast hits to 10146 proteins in 2456 species: Archae - 113; Bacteria - 8401; Metazoa - 78; Fungi - 4; Plants - 37; Viruses - 0; Other Eukaryotes - 1513 (source: NCBI BLink).;Radical SAM superfamily protein transcript=eq;prot=eq; - 5 No
BD1G68630 bdi histone acetyltransferase activity (Blast2GO) pid=Bradi1g68630.1;tid=Bradi1g68630.1;GeneName=Bradi1g68630;transcript=eq;prot=eq + Bd1 No
BD3G47867 bdi pid=Bradi3g47867.1;tid=Bradi3g47867.1;GeneName=Bradi3g47867;transcript=eq;prot=eq + Bd3 No
BD4G39227 bdi pid=Bradi4g39227.1;tid=Bradi4g39227.1;GeneName=Bradi4g39227;transcript=eq;prot=eq + Bd4 No
BD5G13790 bdi histone acetyltransferase activity (Blast2GO) pid=Bradi5g13790.1;tid=Bradi5g13790.1;GeneName=Bradi5g13790;transcript=eq;prot=eq - Bd5 No
CP00004G00680 cpa name=evm.TU.supercontig_4.68;pid=evm.TU.supercontig_4.68;prot=eq;transcript=eq - supercontig_4 No
CP00052G00310 cpa name=evm.TU.supercontig_52.32;pid=evm.TU.supercontig_52.32;prot=eq;transcript=eq + supercontig_52 No
CR03G07940 cre name=au.g10878_t2;pid=293030;prot=eq;tid=293037;transcript=eq + chromosome_3 No
CR07G08700 cre name=au.g14514_t1;pid=296895;prot=eq;tid=296902;transcript=eq - chromosome_7 No
FV0G48980 fve Telomere length regulation protein TEL2 homolog (hCLK2) (probable) transcript=eq;prot=eq;pid=gene22682 - scf0513067 No
FV2G43750 fve Elongator complex protein 3 (similar to) transcript=eq;prot=eq;pid=gene21768 - LG2 No
FV2G47060 fve Methionyl-tRNA synthetase 1 (MetRS 1) (probable) transcript=eq;prot=eq;pid=gene08431 - LG2 No
FV5G09700 fve Elongator complex protein 3 (similar to) transcript=eq;prot=eq;pid=gene09922 - LG5 No
GM04G36780 gma 04 pid=16256974;transcript=eq;prot=eq;name=Glyma04g36780.1 - Gm04 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier