Gene family  

Sub-families
ORTHO004282 (27 genes in 19 species)
ORTHO007509 (23 genes in 17 species)
ORTHO007843 (22 genes in 20 species)
View all sub-families (8)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (9 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (4 genes)
gma
Glycine max (10 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (10 genes)
mes
Manihot esculenta (7 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (10 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (5 genes)
tca
Theobroma cacao (4 genes)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (12 genes)



The gene family HOM000971 has 116 genes in 21 species (6 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 116 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G10360 aly name=scaffold_74600002.1;pid=920940;prot=eq;tid=952453 - scaffold_746 No
AL1G26200 aly name=scaffold_102784.1;pid=889990;prot=eq;tid=921503 + scaffold_1 No
AL1G45460 aly name=scaffold_104832.1;pid=892038;prot=eq;tid=923551 - scaffold_1 No
AL2G06280 aly name=Al_scaffold_0002_568;pid=875974;prot=eq;tid=907487 + scaffold_2 No
AL3G32010 aly name=fgenesh1_pm.C_scaffold_3002385;pid=319369;prot=eq;tid=319369 + scaffold_3 No
AL7G07450 aly name=scaffold_700782.1;pid=913040;prot=eq;tid=944553 - scaffold_7 No
AL7G08120 aly name=scaffold_700853.1;pid=913111;prot=eq;tid=944624 + scaffold_7 No
AL7G14930 aly name=scaffold_701581.1;pid=913839;prot=eq;tid=945352 + scaffold_7 No
AL8G28980 aly name=Al_scaffold_0008_2772;pid=886508;prot=eq;tid=918021 + scaffold_8 No
AT1G27210 ath ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G59850.1); Has 516 Blast hits to 439 proteins in 115 species: Archae - 2; Bacteria - 40; Metazoa - 93; Fungi - 74; Plants - 195; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).;ARM repeat superfamily protein transcript=eq;prot=eq; - 1 No
AT1G50890 ath ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G27060.1); Has 197 Blast hits to 187 proteins in 35 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 19; Plants - 159; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).;ARM repeat superfamily protein transcript=eq;prot=eq; - 1 No
AT1G59850 ath ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G27210.1); Has 622 Blast hits to 550 proteins in 137 species: Archae - 2; Bacteria - 12; Metazoa - 156; Fungi - 145; Plants - 176; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).;ARM repeat superfamily protein transcript=eq;prot=eq; - 1 No
AT2G07170 ath ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G27210.1); Has 437 Blast hits to 391 proteins in 95 species: Archae - 6; Bacteria - 71; Metazoa - 26; Fungi - 88; Plants - 186; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).;ARM repeat superfamily protein transcript=eq;prot=eq; + 2 No
AT4G27060 ath Encodes a novel, plant-specific microtubule-associated protein that regulates the orientation of cortical microtubules and the direction of organ growth. The protein plays a role in control of microtubule dependent anisotropic cell elongation. spr2 mutant rosette leaves, cauline leaves, roots, petioles and petals curl in an anticlockwise direction.;ARM repeat superfamily protein transcript=eq;prot=eq; - 4 No
AT5G62580 ath ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G27210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;ARM repeat superfamily protein transcript=eq;prot=eq; + 5 No
BD1G26090 bdi pid=Bradi1g26090.1;tid=Bradi1g26090.1;GeneName=Bradi1g26090;transcript=eq;prot=eq + Bd1 No
BD1G44560 bdi pid=Bradi1g44560.1;tid=Bradi1g44560.1;GeneName=Bradi1g44560;transcript=eq;prot=eq - Bd1 No
BD3G21540 bdi pid=Bradi3g21540.1;tid=Bradi3g21540.1;GeneName=Bradi3g21540;transcript=eq;prot=eq + Bd3 Yes
BD3G59730 bdi pid=Bradi3g59730.1;tid=Bradi3g59730.1;GeneName=Bradi3g59730;transcript=eq;prot=eq + Bd3 No
BD4G37910 bdi pid=Bradi4g37910.1;tid=Bradi4g37910.1;GeneName=Bradi4g37910;transcript=eq;prot=eq - Bd4 No
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