Gene family  

Sub-families
ORTHO000246 (76 genes in 24 species)
ORTHO055077 (2 genes in 1 species)
ORTHO062375 (2 genes in 1 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (6 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (5 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (14 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (13 genes)
osaindica
Oryza sativa ssp. indica (8 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (7 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (4 genes)
tca
Theobroma cacao (7 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (9 genes)



The gene family HOM000967 has 116 genes in 24 species (8 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 116 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G23930 aly name=fgenesh2_kg.1__2435__AT1G22410.1;pid=472481;prot=eq;tid=472481 + scaffold_1 No
AL5G11770 aly name=Al_scaffold_0005_1128;pid=865649;prot=eq;tid=897162 + scaffold_5 Yes
AL7G02250 aly name=scaffold_700232.1;pid=912490;prot=eq;tid=944003 + scaffold_7 No
AL7G07720 aly name=fgenesh2_kg.7__768__AT4G33510.1;pid=491335;prot=eq;tid=491335 - scaffold_7 No
AL7G36720 aly name=fgenesh1_pg.C_scaffold_7003049;pid=355876;prot=eq;tid=355876 + scaffold_7 No
AT1G22410 ath Class-II DAHP synthetase family protein; FUNCTIONS IN: 3-deoxy-7-phosphoheptulonate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase, class II (InterPro:IPR002480); BEST Arabidopsis thaliana protein match is: 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (TAIR:AT4G39980.1); Has 3811 Blast hits to 3796 proteins in 685 species: Archae - 0; Bacteria - 1237; Metazoa - 0; Fungi - 110; Plants - 171; Viruses - 0; Other Eukaryotes - 2293 (source: NCBI BLink).;Class-II DAHP synthetase family protein transcript=eq;prot=eq; + 1 No
AT4G33510 ath Enzyme catalyzing the first committed step in aromatic amino acid biosynthesis;3-deoxy-d-arabino-heptulosonate 7-phosphate synthase transcript=eq;prot=eq; + 4 No
AT4G39980 ath Encodes a 2-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase, which catalyzes the first committed step in aromatic amino acid biosynthesis. Gene expression is induced by wounding and pathogenic bacteria Pseudomonas syringae.;3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 transcript=eq;prot=eq; + 4 No
BD1G21330 bdi pid=Bradi1g21330.1;tid=Bradi1g21330.1;GeneName=Bradi1g21330;transcript=eq;prot=eq - Bd1 No
BD1G60750 bdi pid=Bradi1g60750.1;tid=Bradi1g60750.1;GeneName=Bradi1g60750;transcript=eq;prot=eq - Bd1 No
BD3G33650 bdi pid=Bradi3g33650.1;tid=Bradi3g33650.1;GeneName=Bradi3g33650;transcript=eq;prot=eq - Bd3 No
BD3G38670 bdi pid=Bradi3g38670.1;tid=Bradi3g38670.1;GeneName=Bradi3g38670;transcript=eq;prot=eq - Bd3 No
CP00036G01580 cpa name=evm.TU.supercontig_36.158;pid=evm.TU.supercontig_36.158;prot=eq;transcript=eq + supercontig_36 No
CP00055G00830 cpa name=evm.TU.supercontig_55.83;pid=evm.TU.supercontig_55.83;prot=eq;transcript=eq - supercontig_55 No
CP00098G00250 cpa name=evm.TU.supercontig_98.25;pid=evm.TU.supercontig_98.25;prot=eq;transcript=eq + supercontig_98 No
CP00098G00260 cpa name=evm.TU.supercontig_98.26;pid=evm.TU.supercontig_98.26;prot=eq;transcript=eq + supercontig_98 No
CP00209G00400 cpa name=evm.TU.supercontig_209.40;pid=evm.TU.supercontig_209.40;prot=eq;transcript=eq + supercontig_209 No
CP00209G00410 cpa name=evm.TU.supercontig_209.41;pid=evm.TU.supercontig_209.41;prot=eq;transcript=eq + supercontig_209 No
CR17G06460 cre name=estExt_fgenesh2_pg.C_320158;pid=192517;prot=eq;tid=192517;transcript=eq - chromosome_17 No
FV0G22320 fve Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic, Precursor (putative) transcript=eq;prot=eq;pid=gene16261 - scf0513168 No
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