Gene family  

Sub-families
ORTHO001130 (41 genes in 23 species)
ORTHO007737 (22 genes in 17 species)
ORTHO046835 (2 genes in 2 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (6 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (11 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (23 genes)
osa
Oryza sativa ssp. japonica (9 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (7 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (3 genes)



The gene family HOM000961 has 117 genes in 23 species (6 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 117 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G04270 aly name=Al_scaffold_0096_3;pid=855936;prot=eq;tid=887449 - scaffold_96 No
AL2G10380 aly name=scaffold_201057.1;pid=893983;prot=eq;tid=925496 + scaffold_2 No
AL2G10390 aly name=scaffold_201058.1;pid=893984;prot=eq;tid=925497 + scaffold_2 No
ATCG00020 ath Encodes chlorophyll binding protein D1, a part of the photosystem II reaction center core;photosystem II reaction center protein A transcript=eq;prot=eq; - chloroplast No
ATCG00040 ath Encodes a maturase located in the trnK intron in the chloroplast genome.;maturase K transcript=eq;prot=eq; - chloroplast No
BD1G05806 bdi pid=Bradi1g05806.1;tid=Bradi1g05806.1;GeneName=Bradi1g05806;transcript=eq;prot=eq - Bd1 No
BD3G18420 bdi pid=Bradi3g18420.1;tid=Bradi3g18420.1;GeneName=Bradi3g18420;transcript=eq;prot=eq + Bd3 No
BD4G19720 bdi pid=Bradi4g19720.1;tid=Bradi4g19720.1;GeneName=Bradi4g19720;transcript=eq;prot=eq + Bd4 No
BD5G10966 bdi pid=Bradi5g10966.1;tid=Bradi5g10966.1;GeneName=Bradi5g10966;transcript=eq;prot=eq - Bd5 No
BDCG00020 bdi psbA;PSII 32kDa protein;protein_id=ACF08621.1; transl_table=11; - chloroplast No
BDCG00040 bdi matK;maturase;protein_id=ACF08622.1; transl_table=11; - chloroplast No
CP00003G03850 cpa name=evm.TU.supercontig_3.385;pid=evm.TU.supercontig_3.385;prot=eq;transcript=eq - supercontig_3 No
CP00669G00030 cpa name=evm.TU.supercontig_669.3;pid=evm.TU.supercontig_669.3;prot=eq;transcript=eq - supercontig_669 No
CP40297G00010 cpa name=evm.TU.contig_40297.1;pid=evm.TU.contig_40297.1;prot=eq;transcript=eq - contig_40297 No
CPCG00030 cpa psbA;photosystem II protein D1;protein_id=ABY86762.1; transl_table=11; - chloroplast No
CPCG00050 cpa matK;maturase;protein_id=ABY86763.1; transl_table=11; - chloroplast No
CRCG00370 cre psbA;photosystem II reaction center protein D1;protein_id=DAA00922.1; transl_table=11; - chloroplast No
CRCG00830 cre psbA;photosystem II reaction center protein D1;protein_id=DAA00957.1; transl_table=11; + chloroplast No
FV0G57020 fve Photosystem Q(B) protein, Precursor (similar to) transcript=eq;prot=eq;pid=gene02738 + scf0512822 No
FV0G59020 fve Photosystem Q(B) protein, Precursor (similar to) transcript=eq;prot=eq;pid=gene32958 - scf0510824 No
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outlier