Gene family  

Sub-families
ORTHO001430 (38 genes in 25 species)
ORTHO005003 (26 genes in 24 species)
ORTHO005270 (26 genes in 22 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (4 genes)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (7 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (7 genes)
ptr
Populus trichocarpa (10 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (7 genes)



The gene family HOM000960 has 117 genes in 25 species (7 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 117 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G49340 aly name=scaffold_105260.1;pid=892466;prot=eq;tid=923979 + scaffold_1 No
AL3G14800 aly name=scaffold_301633.1;pid=897663;prot=eq;tid=929176 - scaffold_3 No
AL3G18830 aly name=fgenesh2_kg.3__1926__AT3G17470.1;pid=479225;prot=eq;tid=479225 + scaffold_3 No
AL6G35220 aly name=Al_scaffold_0006_3405;pid=863896;prot=eq;tid=895409 + scaffold_6 Yes
AL6G39150 aly name=fgenesh2_kg.6__3480__AT4G02260.1;pid=490346;prot=eq;tid=490346 - scaffold_6 No
AT1G54130 ath RELA/SPOT homolog 3 (RSH3); FUNCTIONS IN: GTP diphosphokinase activity; INVOLVED IN: guanosine tetraphosphate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RELA/SPOT homolog 2 (TAIR:AT3G14050.1); Has 13036 Blast hits to 12330 proteins in 2448 species: Archae - 4; Bacteria - 8654; Metazoa - 208; Fungi - 27; Plants - 218; Viruses - 4; Other Eukaryotes - 3921 (source: NCBI BLink).;RELA/SPOT homolog 3 transcript=eq;prot=eq; + 1 No
AT3G14050 ath RELA/SPOT homolog 2 (RSH2); CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RELA/SPOT homolog 3 (TAIR:AT1G54130.1); Has 12447 Blast hits to 12322 proteins in 2456 species: Archae - 4; Bacteria - 8610; Metazoa - 164; Fungi - 55; Plants - 218; Viruses - 2; Other Eukaryotes - 3394 (source: NCBI BLink).;RELA/SPOT homolog 2 transcript=eq;prot=eq; - 3 No
AT3G17470 ath Ca2+-activated RelA/spot homolog (CRSH); FUNCTIONS IN: GTP diphosphokinase activity, calcium ion binding; INVOLVED IN: guanosine tetraphosphate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RELA/SPOT homolog 3 (TAIR:AT1G54130.1); Has 14021 Blast hits to 13962 proteins in 3173 species: Archae - 6; Bacteria - 8120; Metazoa - 1259; Fungi - 992; Plants - 727; Viruses - 0; Other Eukaryotes - 2917 (source: NCBI BLink).;Ca2+-activated RelA/spot homolog transcript=eq;prot=eq; + 3 No
AT4G02260 ath RELA/SPOT homolog 1 (RSH1); FUNCTIONS IN: catalytic activity; INVOLVED IN: response to wounding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), TGS-like (InterPro:IPR012676), TGS (InterPro:IPR004095), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RELA/SPOT homolog 3 (TAIR:AT1G54130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;RELA/SPOT homolog 1 transcript=eq;prot=eq; + 4 No
BD1G62940 bdi pid=Bradi1g62940.1;tid=Bradi1g62940.1;GeneName=Bradi1g62940;transcript=eq;prot=eq - Bd1 No
BD2G34740 bdi myosin heavy chain binding, actin filament binding (Blast2GO) pid=Bradi2g34740.1;tid=Bradi2g34740.1;GeneName=Bradi2g34740;transcript=eq;prot=eq - Bd2 No
BD3G37620 bdi pid=Bradi3g37620.1;tid=Bradi3g37620.1;GeneName=Bradi3g37620;transcript=eq;prot=eq + Bd3 No
BD4G31460 bdi pid=Bradi4g31460.1;tid=Bradi4g31460.1;GeneName=Bradi4g31460;transcript=eq;prot=eq + Bd4 No
CP00146G00230 cpa name=evm.TU.supercontig_146.23;pid=evm.TU.supercontig_146.23;prot=eq;transcript=eq - supercontig_146 No
CP00151G00270 cpa name=evm.TU.supercontig_151.27;pid=evm.TU.supercontig_151.27;prot=eq;transcript=eq + supercontig_151 No
CP00589G00020 cpa name=evm.TU.supercontig_589.2;pid=evm.TU.supercontig_589.2;prot=eq;transcript=eq - supercontig_589 No
CP00589G00030 cpa name=evm.TU.supercontig_589.3;pid=evm.TU.supercontig_589.3;prot=eq;transcript=eq - supercontig_589 No
CP00877G00020 cpa name=evm.TU.supercontig_877.2;pid=evm.TU.supercontig_877.2;prot=eq;transcript=eq + supercontig_877 No
CR03G02580 cre name=pasa_Sanger_mRNA23263.1;pid=419232;prot=eq;tid=413693;transcript=eq - chromosome_3 No
CR19G00830 cre name=pasa_Sanger_mRNA34338;pid=398464;prot=eq;tid=424895;transcript=eq - scaffold_19 No
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outlier