Gene family  

Sub-families
ORTHO002412 (32 genes in 21 species)
ORTHO008220 (22 genes in 16 species)
ORTHO009822 (19 genes in 16 species)
View all sub-families (7)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (4 genes)
gma
Glycine max (12 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (9 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (7 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (8 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (5 genes)
tca
Theobroma cacao (6 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (8 genes)



The gene family HOM000959 has 117 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 117 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G03440 aly name=scaffold_6400001.1;pid=920854;prot=eq;tid=952367 - scaffold_64 No
AL1G00830 aly name=Al_scaffold_0001_82;pid=878315;prot=eq;tid=909828 - scaffold_1 No
AL2G18190 aly name=fgenesh1_pm.C_scaffold_2001020;pid=315987;prot=eq;tid=315987 - scaffold_2 No
AL3G00810 aly name=fgenesh2_kg.3__100__AT3G01290.1;pid=477399;prot=eq;tid=477399 + scaffold_3 No
AL8G29210 aly name=fgenesh2_kg.8__2272__AT5G62740.1;pid=496456;prot=eq;tid=496456 + scaffold_8 No
AT1G69840 ath SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, chloroplast, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G62740.1); Has 5669 Blast hits to 5668 proteins in 1821 species: Archae - 158; Bacteria - 3805; Metazoa - 307; Fungi - 277; Plants - 271; Viruses - 5; Other Eukaryotes - 846 (source: NCBI BLink).;SPFH/Band 7/PHB domain-containing membrane-associated protein family transcript=eq;prot=eq; - 1 No
AT3G01290 ath SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: mitochondrion, plasma membrane, vacuole, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G62740.1); Has 7523 Blast hits to 7522 proteins in 1968 species: Archae - 210; Bacteria - 4831; Metazoa - 573; Fungi - 279; Plants - 280; Viruses - 3; Other Eukaryotes - 1347 (source: NCBI BLink).;SPFH/Band 7/PHB domain-containing membrane-associated protein family transcript=eq;prot=eq; - 3 No
AT5G51570 ath SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G62740.1); Has 5870 Blast hits to 5870 proteins in 1885 species: Archae - 189; Bacteria - 4209; Metazoa - 145; Fungi - 209; Plants - 268; Viruses - 20; Other Eukaryotes - 830 (source: NCBI BLink).;SPFH/Band 7/PHB domain-containing membrane-associated protein family transcript=eq;prot=eq; + 5 No
AT5G62740 ath HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1 (HIR1); INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT1G69840.7); Has 5648 Blast hits to 5647 proteins in 1784 species: Archae - 171; Bacteria - 3783; Metazoa - 267; Fungi - 306; Plants - 270; Viruses - 3; Other Eukaryotes - 848 (source: NCBI BLink).;SPFH/Band 7/PHB domain-containing membrane-associated protein family transcript=eq;prot=eq; + 5 No
BD1G51570 bdi pid=Bradi1g51570.1;tid=Bradi1g51570.1;GeneName=Bradi1g51570;transcript=eq;prot=eq + Bd1 No
BD3G28137 bdi pid=Bradi3g28137.1;tid=Bradi3g28137.1;GeneName=Bradi3g28137;transcript=eq;prot=eq - Bd3 No
BD3G35370 bdi pid=Bradi3g35370.2;tid=Bradi3g35370.2;GeneName=Bradi3g35370;transcript=eq;prot=eq - Bd3 No
BD4G28640 bdi pid=Bradi4g28640.1;tid=Bradi4g28640.1;GeneName=Bradi4g28640;transcript=eq;prot=eq + Bd4 No
BD4G31150 bdi pid=Bradi4g31150.2;tid=Bradi4g31150.2;GeneName=Bradi4g31150;transcript=eq;prot=eq + Bd4 No
CP00003G02820 cpa name=evm.TU.supercontig_3.282;pid=evm.TU.supercontig_3.282;prot=eq;transcript=eq - supercontig_3 No
CP00005G02630 cpa name=evm.TU.supercontig_5.263;pid=evm.TU.supercontig_5.263;prot=eq;transcript=eq - supercontig_5 No
CP00017G01830 cpa name=evm.TU.supercontig_17.183;pid=evm.TU.supercontig_17.183;prot=eq;transcript=eq + supercontig_17 No
CR01G15010 cre name=estExt_gwp_1W.C_420058;pid=139332;prot=eq;tid=139332;transcript=eq + chromosome_1 No
FV0G06090 fve Protein PPLZ12 (similar to) transcript=eq;prot=eq;pid=gene04018 - scf0513158 No
FV5G13940 fve Protein PPLZ12 (similar to) transcript=eq;prot=eq;pid=gene25945 - LG5 No
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