Gene family  

Sub-families
ORTHO003356 (29 genes in 18 species)
ORTHO006538 (24 genes in 16 species)
ORTHO007497 (23 genes in 19 species)
View all sub-families (8)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (4 genes)
fve
Fragaria vesca (5 genes)
gma
Glycine max (12 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (14 genes)
mes
Manihot esculenta (8 genes)
mtr
Medicago truncatula (4 genes)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (8 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (5 genes)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (10 genes)



The gene family HOM000946 has 118 genes in 20 species (16 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 118 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G16780 aly name=fgenesh2_kg.2__1112__AT1G68580.2;pid=475982;prot=eq;tid=475982 + scaffold_2 No
AL5G04370 aly name=Al_scaffold_0005_405;pid=864926;prot=eq;tid=896439 - scaffold_5 No
AL8G21000 aly name=fgenesh2_kg.8__1463__AT5G55600.2;pid=495647;prot=eq;tid=495647 - scaffold_8 No
AT1G68580 ath agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT5G55600.3); Has 284 Blast hits to 251 proteins in 24 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 275; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).;agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein transcript=eq;prot=eq; + 1 No
AT1G68585 ath unknown protein; Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 1 Yes
AT3G25855 ath Copper transport protein family; Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Copper transport protein family transcript=eq;prot=eq; - 3 No
AT5G55600 ath agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT1G68580.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein transcript=eq;prot=eq; - 5 No
BD1G21820 bdi pid=Bradi1g21820.1;tid=Bradi1g21820.1;GeneName=Bradi1g21820;transcript=eq;prot=eq - Bd1 No
BD3G36500 bdi pid=Bradi3g36500.1;tid=Bradi3g36500.1;GeneName=Bradi3g36500;transcript=eq;prot=eq + Bd3 No
BD3G36505 bdi pid=Bradi3g36505.1;tid=Bradi3g36505.1;GeneName=Bradi3g36505;transcript=eq;prot=eq + Bd3 No
BD4G29910 bdi pid=Bradi4g29910.1;tid=Bradi4g29910.1;GeneName=Bradi4g29910;transcript=eq;prot=eq + Bd4 No
CP00001G01820 cpa name=evm.TU.supercontig_1.182;pid=evm.TU.supercontig_1.182;prot=eq;transcript=eq + supercontig_1 No
CP00012G01770 cpa name=evm.TU.supercontig_12.177;pid=evm.TU.supercontig_12.177;prot=eq;transcript=eq + supercontig_12 No
CP01092G00010 cpa name=evm.TU.supercontig_1092.1;pid=evm.TU.supercontig_1092.1;prot=eq;transcript=eq - supercontig_1092 No
CP32159G00010 cpa name=evm.TU.contig_32159.1;pid=evm.TU.contig_32159.1;prot=eq;transcript=eq + contig_32159 No
FV0G01870 fve Protein winged eye (probable) transcript=eq;prot=eq;pid=gene03763 + scf0513158 No
FV0G01880 fve Zinc finger protein 775 (probable) transcript=eq;prot=eq;pid=gene03764 + scf0513158 No
FV2G42560 fve DNA damage response protein WSS1 (probable) transcript=eq;prot=eq;pid=gene23526 - LG2 No
FV3G02680 fve Protein winged eye (probable) transcript=eq;prot=eq;pid=gene19813 - LG3 No
FV5G36340 fve RNA-directed RNA polymerase (Protein L) (probable) transcript=eq;prot=eq;pid=gene24351 + LG5 No
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