Gene family  

Sub-families
ORTHO003544 (29 genes in 18 species)
ORTHO004378 (27 genes in 24 species)
ORTHO013603 (13 genes in 10 species)
View all sub-families (12)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (11 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (9 genes)
sbi
Sorghum bicolor (15 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (8 genes)



The gene family HOM000943 has 119 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 119 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G00840 aly name=scaffold_300105.1;pid=896135;prot=eq;tid=927648 + scaffold_3 No
AL3G19400 aly name=fgenesh2_kg.3__1982__AT3G17940.1;pid=479281;prot=eq;tid=479281 - scaffold_3 No
AL5G16570 aly name=scaffold_501715.1;pid=906011;prot=eq;tid=937524 + scaffold_5 No
AL6G14960 aly name=fgenesh2_kg.6__1489__AT5G15140.1;pid=488355;prot=eq;tid=488355 + scaffold_6 No
AT3G01260 ath Galactose mutarotase-like superfamily protein; FUNCTIONS IN: carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, hexose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase, subgroup (InterPro:IPR015443), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT5G15140.1); Has 6350 Blast hits to 6088 proteins in 1398 species: Archae - 6; Bacteria - 3037; Metazoa - 664; Fungi - 417; Plants - 287; Viruses - 26; Other Eukaryotes - 1913 (source: NCBI BLink).;Galactose mutarotase-like superfamily protein transcript=eq;prot=eq; - 3 No
AT3G17940 ath Galactose mutarotase-like superfamily protein; FUNCTIONS IN: isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, hexose metabolic process, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Aldose 1-epimerase, subgroup (InterPro:IPR015443), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT3G47800.1); Has 4707 Blast hits to 4700 proteins in 1470 species: Archae - 28; Bacteria - 3220; Metazoa - 276; Fungi - 257; Plants - 219; Viruses - 0; Other Eukaryotes - 707 (source: NCBI BLink).;Galactose mutarotase-like superfamily protein transcript=eq;prot=eq; - 3 No
AT3G47800 ath Galactose mutarotase-like superfamily protein; FUNCTIONS IN: aldose 1-epimerase activity; INVOLVED IN: galactose metabolic process, hexose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Aldose 1-epimerase, subgroup (InterPro:IPR015443), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT5G15140.1); Has 4663 Blast hits to 4656 proteins in 1452 species: Archae - 5; Bacteria - 3197; Metazoa - 273; Fungi - 257; Plants - 219; Viruses - 0; Other Eukaryotes - 712 (source: NCBI BLink).;Galactose mutarotase-like superfamily protein transcript=eq;prot=eq; + 3 No
AT5G15140 ath Galactose mutarotase-like superfamily protein; FUNCTIONS IN: aldose 1-epimerase activity; INVOLVED IN: galactose metabolic process, hexose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Aldose 1-epimerase, subgroup (InterPro:IPR015443), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT3G01260.1); Has 86054 Blast hits to 36023 proteins in 2379 species: Archae - 275; Bacteria - 25650; Metazoa - 19137; Fungi - 9557; Plants - 4507; Viruses - 809; Other Eukaryotes - 26119 (source: NCBI BLink).;Galactose mutarotase-like superfamily protein transcript=eq;prot=eq; + 5 No
BD1G15770 bdi pid=Bradi1g15770.1;tid=Bradi1g15770.1;GeneName=Bradi1g15770;transcript=eq;prot=eq - Bd1 No
BD1G61070 bdi pid=Bradi1g61070.1;tid=Bradi1g61070.1;GeneName=Bradi1g61070;transcript=eq;prot=eq + Bd1 No
BD3G20880 bdi UDP-glucose 4-epimerase activity, aldose 1-epimerase activity (Blast2GO) pid=Bradi3g20880.2;tid=Bradi3g20880.2;GeneName=Bradi3g20880;transcript=eq;prot=eq + Bd3 No
BD3G46780 bdi UDP-glucose 4-epimerase activity (Blast2GO) pid=Bradi3g46780.1;tid=Bradi3g46780.1;GeneName=Bradi3g46780;transcript=eq;prot=eq + Bd3 No
BD5G12250 bdi UDP-glucose 4-epimerase activity, aldose 1-epimerase activity (Blast2GO) pid=Bradi5g12250.1;tid=Bradi5g12250.1;GeneName=Bradi5g12250;transcript=eq;prot=eq + Bd5 No
BD5G12260 bdi UDP-glucose 4-epimerase activity (Blast2GO) pid=Bradi5g12260.1;tid=Bradi5g12260.1;GeneName=Bradi5g12260;transcript=eq;prot=eq + Bd5 No
BD5G12280 bdi UDP-glucose 4-epimerase activity (Blast2GO) pid=Bradi5g12280.1;tid=Bradi5g12280.1;GeneName=Bradi5g12280;transcript=eq;prot=eq + Bd5 No
CP00003G03880 cpa name=evm.TU.supercontig_3.388;pid=evm.TU.supercontig_3.388;prot=eq;transcript=eq + supercontig_3 No
CP00014G00240 cpa name=evm.TU.supercontig_14.24;pid=evm.TU.supercontig_14.24;prot=eq;transcript=eq - supercontig_14 No
CP00014G00250 cpa name=evm.TU.supercontig_14.25;pid=evm.TU.supercontig_14.25;prot=eq;transcript=eq - supercontig_14 No
CP00388G00040 cpa name=evm.TU.supercontig_388.4;pid=evm.TU.supercontig_388.4;prot=eq;transcript=eq - supercontig_388 No
CR06G02820 cre name=estExt_fgenesh2_pg.C_30299;pid=187168;prot=eq;tid=187168;transcript=eq - chromosome_6 No
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