Gene family  

Sub-families
ORTHO000163 (89 genes in 25 species)
ORTHO055046 (2 genes in 1 species)
ORTHO061160 (2 genes in 2 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (6 genes)
gma
Glycine max (12 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (19 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (8 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (5 genes)



The gene family HOM000932 has 120 genes in 25 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 120 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G01700 aly name=fgenesh2_kg.1__164__AT1G02500.1;pid=470210;prot=eq;tid=470210 + scaffold_1 No
AL3G18750 aly name=fgenesh2_kg.3__1916__AT3G17390.1;pid=479215;prot=eq;tid=479215 - scaffold_3 No
AL4G22380 aly name=scaffold_402310.1;pid=902809;prot=eq;tid=934322 - scaffold_4 No
AL6G39690 aly name=scaffold_604104.1;pid=912047;prot=eq;tid=943560 + scaffold_6 No
AT1G02500 ath encodes a S-adenosylmethionine synthetase. SAM1 is regulated by protein S-nitrosylation. The covalent binding of nitric oxide (NO) to the Cys114 residue inhibits the enzyme activity.;S-adenosylmethionine synthetase 1 transcript=eq;prot=eq; + 1 No
AT2G36880 ath methionine adenosyltransferase 3 (MAT3); FUNCTIONS IN: copper ion binding, methionine adenosyltransferase activity; INVOLVED IN: one-carbon metabolic process, S-adenosylmethionine biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133), S-adenosylmethionine synthetase superfamily (InterPro:IPR022636), S-adenosylmethionine synthetase, N-terminal (InterPro:IPR022628), S-adenosylmethionine synthetase, C-terminal (InterPro:IPR022630), S-adenosylmethionine synthetase, conserved site (InterPro:IPR022631), S-adenosylmethionine synthetase, central domain (InterPro:IPR022629); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine synthetase family protein (TAIR:AT3G17390.1); Has 10904 Blast hits to 10897 proteins in 2898 species: Archae - 12; Bacteria - 5503; Metazoa - 373; Fungi - 167; Plants - 705; Viruses - 1; Other Eukaryotes - 4143 (source: NCBI BLink).;methionine adenosyltransferase 3 transcript=eq;prot=eq; - 2 No
AT3G17390 ath S-adenosylmethionine synthetase;S-adenosylmethionine synthetase family protein transcript=eq;prot=eq; - 3 No
AT4G01850 ath S-adenosylmethionine synthetase 2 (SAM-2); FUNCTIONS IN: copper ion binding, methionine adenosyltransferase activity; INVOLVED IN: one-carbon metabolic process, S-adenosylmethionine biosynthetic process; LOCATED IN: nucleolus, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133), S-adenosylmethionine synthetase superfamily (InterPro:IPR022636), S-adenosylmethionine synthetase, N-terminal (InterPro:IPR022628), S-adenosylmethionine synthetase, C-terminal (InterPro:IPR022630), S-adenosylmethionine synthetase, conserved site (InterPro:IPR022631), S-adenosylmethionine synthetase, central domain (InterPro:IPR022629); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine synthetase 1 (TAIR:AT1G02500.2); Has 10906 Blast hits to 10898 proteins in 2898 species: Archae - 12; Bacteria - 5497; Metazoa - 373; Fungi - 167; Plants - 706; Viruses - 1; Other Eukaryotes - 4150 (source: NCBI BLink).;S-adenosylmethionine synthetase 2 transcript=eq;prot=eq; - 4 No
BD2G11250 bdi ADP binding, ATP binding (Blast2GO) pid=Bradi2g11250.1;tid=Bradi2g11250.1;GeneName=Bradi2g11250;transcript=eq;prot=eq - Bd2 No
BD2G12150 bdi ADP binding, ATP binding (Blast2GO) pid=Bradi2g12150.2;tid=Bradi2g12150.2;GeneName=Bradi2g12150;transcript=eq;prot=eq - Bd2 No
BD2G12160 bdi ADP binding, ATP binding (Blast2GO) pid=Bradi2g12160.1;tid=Bradi2g12160.1;GeneName=Bradi2g12160;transcript=eq;prot=eq - Bd2 No
CP00048G02080 cpa name=evm.TU.supercontig_48.208;pid=evm.TU.supercontig_48.208;prot=eq;transcript=eq + supercontig_48 No
CP00067G00660 cpa name=evm.TU.supercontig_67.67;pid=evm.TU.supercontig_67.67;prot=eq;transcript=eq - supercontig_67 No
CP00102G00230 cpa name=evm.TU.supercontig_102.24;pid=evm.TU.supercontig_102.24;prot=eq;transcript=eq - supercontig_102 No
CP00146G00370 cpa name=evm.TU.supercontig_146.37;pid=evm.TU.supercontig_146.37;prot=eq;transcript=eq - supercontig_146 No
CR06G00300 cre name=estExt_fgenesh2_kg.C_30176;pid=182408;prot=eq;tid=182408;transcript=eq + chromosome_6 No
FV1G21780 fve S-adenosylmethionine synthetase 2 (AdoMet synthetase 2) transcript=eq;prot=eq;pid=gene24556 + LG1 No
FV4G19110 fve S-adenosylmethionine synthetase 2 (AdoMet synthetase 2) transcript=eq;prot=eq;pid=gene22974 - LG4 No
FV6G03830 fve S-adenosylmethionine synthetase 1 (AdoMet synthetase 1) transcript=eq;prot=eq;pid=gene22927 - LG6 No
FV6G07820 fve S-adenosylmethionine synthetase (AdoMet synthetase) (similar to) transcript=eq;prot=eq;pid=gene13617 + LG6 No
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