Gene family  

Sub-families
ORTHO005202 (26 genes in 22 species)
ORTHO009470 (20 genes in 14 species)
ORTHO010675 (18 genes in 16 species)
View all sub-families (10)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (9 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (8 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (5 genes)
gma
Glycine max (9 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (7 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (8 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (5 genes)
tca
Theobroma cacao (5 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (8 genes)



The gene family HOM000908 has 122 genes in 24 species (8 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 122 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G05120 aly name=fgenesh1_pg.C_scaffold_139000001;pid=359352;prot=eq;tid=359352 + scaffold_139 No
AL3G00020 aly name=Al_scaffold_0003_2;pid=871361;prot=eq;tid=902874 - scaffold_3 No
AL3G24550 aly name=fgenesh2_kg.3__2439__AT3G22260.1;pid=479738;prot=eq;tid=479738 + scaffold_3 No
AL4G25760 aly name=fgenesh2_kg.4__2012__AT2G39320.1;pid=482952;prot=eq;tid=482952 - scaffold_4 No
AL5G11660 aly name=scaffold_501198.1;pid=905494;prot=eq;tid=937007 + scaffold_5 No
AL5G15560 aly name=fgenesh2_kg.5__1059__AT2G39320.1;pid=485067;prot=eq;tid=485067 - scaffold_5 No
AL5G15580 aly name=scaffold_501615.1;pid=905911;prot=eq;tid=937424 - scaffold_5 No
AL6G02470 aly name=fgenesh2_kg.6__238__AT5G03330.1;pid=487104;prot=eq;tid=487104 + scaffold_6 No
AL6G03580 aly name=scaffold_600366.1;pid=908309;prot=eq;tid=939822 + scaffold_6 No
AT2G39320 ath Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT5G03330.2); Has 34326 Blast hits to 13430 proteins in 905 species: Archae - 83; Bacteria - 2495; Metazoa - 12638; Fungi - 3519; Plants - 1442; Viruses - 150; Other Eukaryotes - 13999 (source: NCBI BLink).;Cysteine proteinases superfamily protein transcript=eq;prot=eq; - 2 No
AT3G02070 ath Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT3G22260.1); Has 783 Blast hits to 775 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 340; Fungi - 57; Plants - 249; Viruses - 10; Other Eukaryotes - 127 (source: NCBI BLink).;Cysteine proteinases superfamily protein transcript=eq;prot=eq; + 3 No
AT3G22260 ath Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT3G02070.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Cysteine proteinases superfamily protein transcript=eq;prot=eq; + 3 No
AT5G03330 ath Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT5G04250.2); Has 956 Blast hits to 946 proteins in 179 species: Archae - 0; Bacteria - 4; Metazoa - 388; Fungi - 96; Plants - 262; Viruses - 17; Other Eukaryotes - 189 (source: NCBI BLink).;Cysteine proteinases superfamily protein transcript=eq;prot=eq; + 5 No
AT5G04250 ath Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT5G03330.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Cysteine proteinases superfamily protein transcript=eq;prot=eq; + 5 No
BD1G00720 bdi pid=Bradi1g00720.1;tid=Bradi1g00720.1;GeneName=Bradi1g00720;transcript=eq;prot=eq + Bd1 No
BD1G32340 bdi pid=Bradi1g32340.2;tid=Bradi1g32340.2;GeneName=Bradi1g32340;transcript=eq;prot=eq + Bd1 No
BD1G72850 bdi pid=Bradi1g72850.1;tid=Bradi1g72850.1;GeneName=Bradi1g72850;transcript=eq;prot=eq - Bd1 No
BD3G05140 bdi pid=Bradi3g05140.2;tid=Bradi3g05140.2;GeneName=Bradi3g05140;transcript=eq;prot=eq - Bd3 No
BD3G12600 bdi pid=Bradi3g12600.2;tid=Bradi3g12600.2;GeneName=Bradi3g12600;transcript=eq;prot=eq + Bd3 No
BD3G55560 bdi pid=Bradi3g55560.1;tid=Bradi3g55560.1;GeneName=Bradi3g55560;transcript=eq;prot=eq - Bd3 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier