Gene family  

Sub-families
ORTHO009356 (20 genes in 16 species)
ORTHO013371 (14 genes in 10 species)
ORTHO014864 (11 genes in 9 species)
View all sub-families (12)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (5 genes)
gma
Glycine max (11 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (14 genes)
mes
Manihot esculenta (7 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (9 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (7 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (10 genes)



The gene family HOM000904 has 123 genes in 23 species (7 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 123 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G06310 aly name=scaffold_100673.1;pid=887879;prot=eq;tid=919392 - scaffold_1 No
AL1G08430 aly name=fgenesh1_pg.C_scaffold_1000726;pid=334161;prot=eq;tid=334161 - scaffold_1 No
AL1G36820 aly name=scaffold_103944.1;pid=891150;prot=eq;tid=922663 + scaffold_1 No
AL3G25500 aly name=fgenesh2_kg.3__2515__AT3G23060.1;pid=479814;prot=eq;tid=479814 + scaffold_3 No
AL4G15220 aly name=scaffold_401548.1;pid=902047;prot=eq;tid=933560 + scaffold_4 No
AL7G34210 aly name=Al_scaffold_0007_3308;pid=859809;prot=eq;tid=891322 - scaffold_7 No
AT1G06770 ath Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. The DRIP1-GFP fusion protein is nuclear-localized. DRIP1 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.;DREB2A-interacting protein 1 transcript=eq;prot=eq; - 1 No
AT1G08780 ath ABI3-interacting protein 3 (AIP3); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin beta-like (InterPro:IPR002777), Prefoldin, subunit 4 (InterPro:IPR016661); Has 376 Blast hits to 375 proteins in 196 species: Archae - 2; Bacteria - 0; Metazoa - 120; Fungi - 130; Plants - 57; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).;ABI3-interacting protein 3 transcript=eq;prot=eq; - 1 No
AT2G30580 ath Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.;DREB2A-interacting protein 2 transcript=eq;prot=eq; + 2 No
AT3G23060 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: central cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: DREB2A-interacting protein 2 (TAIR:AT2G30580.1); Has 1905 Blast hits to 1881 proteins in 164 species: Archae - 0; Bacteria - 4; Metazoa - 1370; Fungi - 69; Plants - 271; Viruses - 4; Other Eukaryotes - 187 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 3 No
BD1G05390 bdi RING, subfamily zinc finger (C3HC4-type RING finger) family protein pid=Bradi1g05390.1;tid=Bradi1g05390.1;GeneName=Bradi1g05390;transcript=eq;prot=eq - Bd1 No
BD1G09140 bdi RING, subfamily zinc finger (C3HC4-type RING finger) family protein pid=Bradi1g09140.1;tid=Bradi1g09140.1;GeneName=Bradi1g09140;transcript=eq;prot=eq + Bd1 No
BD1G14270 bdi RING, subfamily zinc finger (C3HC4-type RING finger) family protein pid=Bradi1g14270.1;tid=Bradi1g14270.1;GeneName=Bradi1g14270;transcript=eq;prot=eq + Bd1 No
BD1G14290 bdi pid=Bradi1g14290.1;tid=Bradi1g14290.1;GeneName=Bradi1g14290;transcript=eq;prot=eq + Bd1 No
BD4G02647 bdi pid=Bradi4g02647.1;tid=Bradi4g02647.1;GeneName=Bradi4g02647;transcript=eq;prot=eq + Bd4 No
CP00058G00330 cpa name=evm.TU.supercontig_58.33;pid=evm.TU.supercontig_58.33;prot=eq;transcript=eq + supercontig_58 No
CP00617G00010 cpa name=evm.TU.supercontig_617.1;pid=evm.TU.supercontig_617.1;prot=eq;transcript=eq + supercontig_617 No
CP00632G00020 cpa name=evm.TU.supercontig_632.2;pid=evm.TU.supercontig_632.2;prot=eq;transcript=eq + supercontig_632 No
CR16G04880 cre name=e_gwW.28.116.1;pid=118694;prot=eq;tid=118694;transcript=eq + chromosome_16 No
FV0G25690 fve Probable prefoldin subunit 4 (similar to) transcript=eq;prot=eq;pid=gene16580 + scf0513168 No
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