Gene family 
- Id
- HOM000904
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO009356 (20 genes in 16 species)
ORTHO013371 (14 genes in 10 species)
ORTHO014864 (11 genes in 9 species)
View all sub-families (12)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (6 genes)
- ath
- Arabidopsis thaliana (4 genes)
- bdi
- Brachypodium distachyon (5 genes)
- cpa
- Carica papaya (3 genes)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (5 genes)
- gma
- Glycine max (11 genes)
- lja
- Lotus japonicus (6 genes)
- mdo
- Malus domestica (14 genes)
- mes
- Manihot esculenta (7 genes)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (3 genes)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (5 genes)
- osaindica
- Oryza sativa ssp. indica (4 genes)
- ppa
- Physcomitrella patens (3 genes)
- ptr
- Populus trichocarpa (9 genes)
- rco
- Ricinus communis (4 genes)
- sbi
- Sorghum bicolor (7 genes)
- smo
- Selaginella moellendorffii (3 genes)
- tca
- Theobroma cacao (7 genes)
- vvi
- Vitis vinifera (4 genes)
- zma
- Zea mays (10 genes)
The gene family HOM000904 has 123 genes in 23 species (7 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM000904
Page 1 of 7, showing 20 records out of 123 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G06310 | aly | name=scaffold_100673.1;pid=887879;prot=eq;tid=919392 | - | scaffold_1 | No | |
| AL1G08430 | aly | name=fgenesh1_pg.C_scaffold_1000726;pid=334161;prot=eq;tid=334161 | - | scaffold_1 | No | |
| AL1G36820 | aly | name=scaffold_103944.1;pid=891150;prot=eq;tid=922663 | + | scaffold_1 | No | |
| AL3G25500 | aly | name=fgenesh2_kg.3__2515__AT3G23060.1;pid=479814;prot=eq;tid=479814 | + | scaffold_3 | No | |
| AL4G15220 | aly | name=scaffold_401548.1;pid=902047;prot=eq;tid=933560 | + | scaffold_4 | No | |
| AL7G34210 | aly | name=Al_scaffold_0007_3308;pid=859809;prot=eq;tid=891322 | - | scaffold_7 | No | |
| AT1G06770 | ath | Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. The DRIP1-GFP fusion protein is nuclear-localized. DRIP1 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.;DREB2A-interacting protein 1 | transcript=eq;prot=eq; | - | 1 | No |
| AT1G08780 | ath | ABI3-interacting protein 3 (AIP3); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin beta-like (InterPro:IPR002777), Prefoldin, subunit 4 (InterPro:IPR016661); Has 376 Blast hits to 375 proteins in 196 species: Archae - 2; Bacteria - 0; Metazoa - 120; Fungi - 130; Plants - 57; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).;ABI3-interacting protein 3 | transcript=eq;prot=eq; | - | 1 | No |
| AT2G30580 | ath | Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.;DREB2A-interacting protein 2 | transcript=eq;prot=eq; | + | 2 | No |
| AT3G23060 | ath | RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: central cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: DREB2A-interacting protein 2 (TAIR:AT2G30580.1); Has 1905 Blast hits to 1881 proteins in 164 species: Archae - 0; Bacteria - 4; Metazoa - 1370; Fungi - 69; Plants - 271; Viruses - 4; Other Eukaryotes - 187 (source: NCBI BLink).;RING/U-box superfamily protein | transcript=eq;prot=eq; | + | 3 | No |
| BD1G05390 | bdi | RING, subfamily zinc finger (C3HC4-type RING finger) family protein | pid=Bradi1g05390.1;tid=Bradi1g05390.1;GeneName=Bradi1g05390;transcript=eq;prot=eq | - | Bd1 | No |
| BD1G09140 | bdi | RING, subfamily zinc finger (C3HC4-type RING finger) family protein | pid=Bradi1g09140.1;tid=Bradi1g09140.1;GeneName=Bradi1g09140;transcript=eq;prot=eq | + | Bd1 | No |
| BD1G14270 | bdi | RING, subfamily zinc finger (C3HC4-type RING finger) family protein | pid=Bradi1g14270.1;tid=Bradi1g14270.1;GeneName=Bradi1g14270;transcript=eq;prot=eq | + | Bd1 | No |
| BD1G14290 | bdi | pid=Bradi1g14290.1;tid=Bradi1g14290.1;GeneName=Bradi1g14290;transcript=eq;prot=eq | + | Bd1 | No | |
| BD4G02647 | bdi | pid=Bradi4g02647.1;tid=Bradi4g02647.1;GeneName=Bradi4g02647;transcript=eq;prot=eq | + | Bd4 | No | |
| CP00058G00330 | cpa | name=evm.TU.supercontig_58.33;pid=evm.TU.supercontig_58.33;prot=eq;transcript=eq | + | supercontig_58 | No | |
| CP00617G00010 | cpa | name=evm.TU.supercontig_617.1;pid=evm.TU.supercontig_617.1;prot=eq;transcript=eq | + | supercontig_617 | No | |
| CP00632G00020 | cpa | name=evm.TU.supercontig_632.2;pid=evm.TU.supercontig_632.2;prot=eq;transcript=eq | + | supercontig_632 | No | |
| CR16G04880 | cre | name=e_gwW.28.116.1;pid=118694;prot=eq;tid=118694;transcript=eq | + | chromosome_16 | No | |
| FV0G25690 | fve | Probable prefoldin subunit 4 (similar to) | transcript=eq;prot=eq;pid=gene16580 | + | scf0513168 | No |