Gene family  

Sub-families
ORTHO009394 (20 genes in 17 species)
ORTHO009887 (19 genes in 15 species)
ORTHO011833 (16 genes in 11 species)
View all sub-families (14)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (4 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (27 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (8 genes)
mes
Manihot esculenta (6 genes)
mtr
Medicago truncatula (4 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ppa
Physcomitrella patens (7 genes)
ptr
Populus trichocarpa (8 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (8 genes)
tca
Theobroma cacao (6 genes)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (5 genes)



The gene family HOM000889 has 125 genes in 20 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 125 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G29080 aly name=scaffold_103122.1;pid=890328;prot=eq;tid=921841 + scaffold_1 No
AL1G49860 aly name=scaffold_105316.1;pid=892522;prot=eq;tid=924035 + scaffold_1 No
AL2G22790 aly name=fgenesh1_pg.C_scaffold_2001688;pid=339589;prot=eq;tid=339589 - scaffold_2 No
AL4G32010 aly name=scaffold_403347.1;pid=903846;prot=eq;tid=935359 - scaffold_4 No
AL4G32020 aly name=fgenesh2_kg.4__2616__AT2G44300.1;pid=483556;prot=eq;tid=483556 - scaffold_4 No
AL5G29130 aly name=scaffold_503040.1;pid=907336;prot=eq;tid=938849 - scaffold_5 No
AT1G27950 ath Encodes LTPG1, a lipid transfer protein with a predicted GPI (glycosylphosphatidylinositol)-anchor domain. Localized in the plasma membrane. Disruption of the LTPG1 gene causes alterations of cuticular lipid composition, but no significant changes on total wax and cutin monomer loads are seen.;glycosylphosphatidylinositol-anchored lipid protein transfer 1 transcript=eq;prot=eq; + 1 No
AT1G55260 ath Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: nucleus, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G44290.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein transcript=eq;prot=eq; + 1 No
AT1G73890 ath Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT1G55260.2); Has 645 Blast hits to 641 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 645; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein transcript=eq;prot=eq; - 1 No
AT2G44290 ath Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: plasma membrane, anchored to membrane; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G44300.1); Has 678 Blast hits to 674 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 678; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein transcript=eq;prot=eq; - 2 No
AT2G44300 ath Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G44290.1); Has 754 Blast hits to 750 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 754; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein transcript=eq;prot=eq; - 2 No
AT3G58550 ath Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G44290.1); Has 502 Blast hits to 498 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 502; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein transcript=eq;prot=eq; - 3 No
BD1G04930 bdi pid=Bradi1g04930.1;tid=Bradi1g04930.1;GeneName=Bradi1g04930;transcript=eq;prot=eq - Bd1 No
BD1G54560 bdi pid=Bradi1g54560.1;tid=Bradi1g54560.1;GeneName=Bradi1g54560;transcript=eq;prot=eq - Bd1 No
BD1G73910 bdi pid=Bradi1g73910.1;tid=Bradi1g73910.1;GeneName=Bradi1g73910;transcript=eq;prot=eq - Bd1 No
BD3G41350 bdi pid=Bradi3g41350.1;tid=Bradi3g41350.1;GeneName=Bradi3g41350;transcript=eq;prot=eq - Bd3 No
CP00013G00040 cpa name=evm.TU.supercontig_13.4;pid=evm.TU.supercontig_13.4;prot=eq;transcript=eq - supercontig_13 No
CP00023G01380 cpa name=evm.TU.supercontig_23.138;pid=evm.TU.supercontig_23.138;prot=eq;transcript=eq + supercontig_23 No
CP00808G00030 cpa name=evm.TU.supercontig_808.3;pid=evm.TU.supercontig_808.3;prot=eq;transcript=eq + supercontig_808 No
CP01500G00030 cpa name=evm.TU.supercontig_1500.3;pid=evm.TU.supercontig_1500.3;prot=eq;transcript=eq + supercontig_1500 No
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