Gene family  

Sub-families
ORTHO005022 (26 genes in 19 species)
ORTHO005239 (26 genes in 18 species)
ORTHO009593 (20 genes in 17 species)
View all sub-families (11)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (4 genes)
gma
Glycine max (21 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (10 genes)
mes
Manihot esculenta (7 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (4 genes)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (3 genes)
tca
Theobroma cacao (6 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (8 genes)



The gene family HOM000886 has 125 genes in 22 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 125 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G47980 aly name=Al_scaffold_0001_4728;pid=882961;prot=eq;tid=914474 - scaffold_1 No
AL3G16390 aly name=fgenesh2_kg.3__1692__AT3G15450.1;pid=478991;prot=eq;tid=478991 + scaffold_3 No
AL3G25200 aly name=scaffold_302738.1;pid=898768;prot=eq;tid=930281 + scaffold_3 No
AL5G22590 aly name=scaffold_502349.1;pid=906645;prot=eq;tid=938158 - scaffold_5 No
AL6G19350 aly name=fgenesh2_kg.6__1933__AT5G19140.1;pid=488799;prot=eq;tid=488799 + scaffold_6 No
AL7G14530 aly name=scaffold_701536.1;pid=913794;prot=eq;tid=945307 + scaffold_7 No
AL8G06180 aly name=fgenesh2_kg.8__439__AT5G43830.1;pid=494623;prot=eq;tid=494623 + scaffold_8 No
AT3G15450 ath Aluminium induced protein with YGL and LRDR motifs; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Aluminium induced protein with YGL and LRDR motifs (TAIR:AT4G27450.1); Has 430 Blast hits to 430 proteins in 86 species: Archae - 0; Bacteria - 40; Metazoa - 2; Fungi - 2; Plants - 364; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).;Aluminium induced protein with YGL and LRDR motifs transcript=eq;prot=eq; + 3 No
AT3G22850 ath Aluminium induced protein with YGL and LRDR motifs; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Aluminium induced protein with YGL and LRDR motifs (TAIR:AT5G43830.1); Has 1324 Blast hits to 1324 proteins in 483 species: Archae - 0; Bacteria - 791; Metazoa - 46; Fungi - 0; Plants - 333; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).;Aluminium induced protein with YGL and LRDR motifs transcript=eq;prot=eq; + 3 No
AT4G27450 ath Aluminium induced protein with YGL and LRDR motifs; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Aluminium induced protein with YGL and LRDR motifs (TAIR:AT3G15450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Aluminium induced protein with YGL and LRDR motifs transcript=eq;prot=eq; - 4 No
AT5G19140 ath AILP1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus, response to aluminum ion; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Aluminium induced protein with YGL and LRDR motifs (TAIR:AT5G43830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Aluminium induced protein with YGL and LRDR motifs transcript=eq;prot=eq; + 5 No
AT5G43830 ath Aluminium induced protein with YGL and LRDR motifs; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Aluminium induced protein with YGL and LRDR motifs (TAIR:AT3G22850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Aluminium induced protein with YGL and LRDR motifs transcript=eq;prot=eq; - 5 No
BD1G05540 bdi ATP binding (Blast2GO) pid=Bradi1g05540.1;tid=Bradi1g05540.1;GeneName=Bradi1g05540;transcript=eq;prot=eq - Bd1 No
BD1G08930 bdi pid=Bradi1g08930.1;tid=Bradi1g08930.1;GeneName=Bradi1g08930;transcript=eq;prot=eq + Bd1 No
BD4G42890 bdi pid=Bradi4g42890.1;tid=Bradi4g42890.1;GeneName=Bradi4g42890;transcript=eq;prot=eq + Bd4 No
BD5G26320 bdi pid=Bradi5g26320.1;tid=Bradi5g26320.1;GeneName=Bradi5g26320;transcript=eq;prot=eq - Bd5 No
CP00027G00510 cpa name=evm.TU.supercontig_27.52;pid=evm.TU.supercontig_27.52;prot=eq;transcript=eq - supercontig_27 No
CP00027G00630 cpa name=evm.TU.supercontig_27.64;pid=evm.TU.supercontig_27.64;prot=eq;transcript=eq + supercontig_27 No
CP00044G01250 cpa name=evm.TU.supercontig_44.125;pid=evm.TU.supercontig_44.125;prot=eq;transcript=eq + supercontig_44 No
CP00080G00380 cpa name=evm.TU.supercontig_80.38;pid=evm.TU.supercontig_80.38;prot=eq;transcript=eq - supercontig_80 No
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