Gene family  

Sub-families
ORTHO004662 (27 genes in 19 species)
ORTHO007798 (22 genes in 19 species)
ORTHO010997 (18 genes in 17 species)
View all sub-families (13)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (7 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (5 genes)
gma
Glycine max (18 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (10 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (5 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (12 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (5 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (5 genes)



The gene family HOM000884 has 125 genes in 25 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 125 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G11620 aly name=fgenesh2_kg.3__1161__AT3G11210.1;pid=478460;prot=eq;tid=478460 - scaffold_3 No
AL4G24380 aly name=scaffold_402518.1;pid=903017;prot=eq;tid=934530 + scaffold_4 No
AL8G02450 aly name=fgenesh2_kg.8__203__AT5G45920.1;pid=494387;prot=eq;tid=494387 - scaffold_8 No
AL8G29460 aly name=fgenesh2_kg.8__2294__AT5G62930.1;pid=496478;prot=eq;tid=496478 + scaffold_8 No
AT2G38180 ath SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Esterase, SGNH hydrolase-type, subgroup (InterPro:IPR013831), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT3G11210.1); Has 749 Blast hits to 745 proteins in 289 species: Archae - 0; Bacteria - 287; Metazoa - 79; Fungi - 158; Plants - 167; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).;SGNH hydrolase-type esterase superfamily protein transcript=eq;prot=eq; + 2 No
AT3G11210 ath SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Esterase, SGNH hydrolase-type, subgroup (InterPro:IPR013831), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT2G38180.1); Has 768 Blast hits to 767 proteins in 294 species: Archae - 0; Bacteria - 304; Metazoa - 76; Fungi - 152; Plants - 166; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).;SGNH hydrolase-type esterase superfamily protein transcript=eq;prot=eq; - 3 No
AT5G45920 ath SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Esterase, SGNH hydrolase-type, subgroup (InterPro:IPR013831), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT5G62930.1); Has 723 Blast hits to 722 proteins in 270 species: Archae - 0; Bacteria - 249; Metazoa - 79; Fungi - 169; Plants - 173; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).;SGNH hydrolase-type esterase superfamily protein transcript=eq;prot=eq; + 5 No
AT5G62930 ath SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Esterase, SGNH hydrolase-type, subgroup (InterPro:IPR013831), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT5G45920.1); Has 689 Blast hits to 688 proteins in 254 species: Archae - 0; Bacteria - 229; Metazoa - 77; Fungi - 158; Plants - 171; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).;SGNH hydrolase-type esterase superfamily protein transcript=eq;prot=eq; + 5 No
BD1G23070 bdi pid=Bradi1g23070.1;tid=Bradi1g23070.1;GeneName=Bradi1g23070;transcript=eq;prot=eq + Bd1 No
BD1G49020 bdi pid=Bradi1g49020.1;tid=Bradi1g49020.1;GeneName=Bradi1g49020;transcript=eq;prot=eq - Bd1 No
BD1G74310 bdi pid=Bradi1g74310.1;tid=Bradi1g74310.1;GeneName=Bradi1g74310;transcript=eq;prot=eq - Bd1 No
BD2G06900 bdi pid=Bradi2g06900.1;tid=Bradi2g06900.1;GeneName=Bradi2g06900;transcript=eq;prot=eq - Bd2 No
BD2G13430 bdi pid=Bradi2g13430.1;tid=Bradi2g13430.1;GeneName=Bradi2g13430;transcript=eq;prot=eq + Bd2 No
CP00007G00390 cpa name=evm.TU.supercontig_7.39;pid=evm.TU.supercontig_7.39;prot=eq;transcript=eq - supercontig_7 No
CP00011G01340 cpa name=evm.TU.supercontig_11.135;pid=evm.TU.supercontig_11.135;prot=eq;transcript=eq - supercontig_11 No
CP00019G01750 cpa name=evm.TU.supercontig_19.176;pid=evm.TU.supercontig_19.176;prot=eq;transcript=eq - supercontig_19 No
CP00076G00370 cpa name=evm.TU.supercontig_76.37;pid=evm.TU.supercontig_76.37;prot=eq;transcript=eq - supercontig_76 No
CP00076G00380 cpa name=evm.TU.supercontig_76.38;pid=evm.TU.supercontig_76.38;prot=eq;transcript=eq - supercontig_76 No
CP00076G00390 cpa name=evm.TU.supercontig_76.39;pid=evm.TU.supercontig_76.39;prot=eq;transcript=eq - supercontig_76 Yes
CP00076G00400 cpa name=evm.TU.supercontig_76.40;pid=evm.TU.supercontig_76.40;prot=eq;transcript=eq - supercontig_76 No
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