Gene family  

Sub-families
ORTHO001957 (34 genes in 20 species)
ORTHO006338 (24 genes in 18 species)
ORTHO007347 (23 genes in 20 species)
View all sub-families (9)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (8 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (11 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (7 genes)
gma
Glycine max (8 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (15 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (9 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (9 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (5 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (3 genes)



The gene family HOM000883 has 126 genes in 25 species (8 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 126 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G34720 aly name=scaffold_103717.1;pid=890923;prot=eq;tid=922436 - scaffold_1 No
AL1G43130 aly name=scaffold_104564.1;pid=891770;prot=eq;tid=923283 + scaffold_1 No
AL2G13100 aly name=scaffold_201325.1;pid=894251;prot=eq;tid=925764 - scaffold_2 No
AL3G32250 aly name=fgenesh1_pm.C_scaffold_3002397;pid=319381;prot=eq;tid=319381 + scaffold_3 No
AL3G34490 aly name=scaffold_303675.1;pid=899705;prot=eq;tid=931218 + scaffold_3 No
AL5G00890 aly name=fgenesh2_kg.5__88__AT2G01810.1;pid=484096;prot=eq;tid=484096 + scaffold_5 No
AL6G17620 aly name=scaffold_601828.1;pid=909771;prot=eq;tid=941284 - scaffold_6 No
AL6G21910 aly name=fgenesh2_kg.6__2210__AT5G22260.1;pid=489076;prot=eq;tid=489076 - scaffold_6 No
AT1G33420 ath RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 734 Blast hits to 722 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 264; Plants - 211; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).;RING/FYVE/PHD zinc finger superfamily protein transcript=eq;prot=eq; - 1 No
AT1G66170 ath encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to the nucleus.;RING/FYVE/PHD zinc finger superfamily protein transcript=eq;prot=eq; - 1 No
AT2G01810 ath RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 637 Blast hits to 622 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 216; Plants - 250; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).;RING/FYVE/PHD zinc finger superfamily protein transcript=eq;prot=eq; + 2 No
AT2G07714 ath transcription factor-related; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00550.1); Has 111 Blast hits to 111 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;transcription factor-related transcript=eq;prot=eq; - 2 No
AT5G22260 ath Sporophytic factor controlling anther and pollen development. Mutants fail to make functional pollen;pollen degeneration occurs after microspore release and the tapetum also appears abnormally vacuolated. Similar to PHD-finger motif transcription factors.;RING/FYVE/PHD zinc finger superfamily protein transcript=eq;prot=eq; - 5 No
ATMG00550 ath hypothetical protein transcript=eq;prot=eq; - mitochondrial No
BD1G10680 bdi histone-lysine N-methyltransferase activity (Blast2GO) pid=Bradi1g10680.1;tid=Bradi1g10680.1;GeneName=Bradi1g10680;transcript=eq;prot=eq + Bd1 No
BD2G56710 bdi histone-lysine N-methyltransferase activity (Blast2GO) pid=Bradi2g56710.1;tid=Bradi2g56710.1;GeneName=Bradi2g56710;transcript=eq;prot=eq + Bd2 No
BD4G21800 bdi histone-lysine N-methyltransferase activity (Blast2GO) pid=Bradi4g21800.1;tid=Bradi4g21800.1;GeneName=Bradi4g21800;transcript=eq;prot=eq + Bd4 No
BD4G31760 bdi histone-lysine N-methyltransferase activity (Blast2GO) pid=Bradi4g31760.1;tid=Bradi4g31760.1;GeneName=Bradi4g31760;transcript=eq;prot=eq + Bd4 No
CP00002G01100 cpa name=evm.TU.supercontig_2.110;pid=evm.TU.supercontig_2.110;prot=eq;transcript=eq - supercontig_2 No
CP00002G01520 cpa name=evm.TU.supercontig_2.152;pid=evm.TU.supercontig_2.152;prot=eq;transcript=eq - supercontig_2 No
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