Gene family  

Sub-families
ORTHO000157 (90 genes in 25 species)
ORTHO047941 (2 genes in 2 species)
ORTHO058205 (2 genes in 2 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (13 genes)
mdo
Malus domestica (18 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (5 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ota
Ostreococcus tauri (4 genes)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (4 genes)



The gene family HOM000880 has 126 genes in 25 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 126 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G05020 aly name=fgenesh2_kg.1__506__AT1G05520.1;pid=470552;prot=eq;tid=470552 - scaffold_1 No
AL2G00350 aly name=fgenesh1_pm.C_scaffold_2000024;pid=314991;prot=eq;tid=314991 - scaffold_2 No
AL3G26470 aly name=fgenesh2_kg.3__2579__AT3G23660.1;pid=479878;prot=eq;tid=479878 - scaffold_3 No
AL4G00830 aly name=fgenesh2_kg.4__91__AT2G21630.1;pid=481031;prot=eq;tid=481031 + scaffold_4 No
AL4G01470 aly name=fgenesh2_kg.4__141__AT2G21630.1;pid=481081;prot=eq;tid=481081 - scaffold_4 No
AL7G30310 aly name=fgenesh2_kg.7__2926__AT4G14160.1;pid=493493;prot=eq;tid=493493 - scaffold_7 No
AL8G06370 aly name=fgenesh2_kg.8__453__AT5G43670.1;pid=494637;prot=eq;tid=494637 + scaffold_8 No
AT1G05520 ath Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: response to salt stress, transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT3G23660.1); Has 1391 Blast hits to 1379 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 486; Fungi - 398; Plants - 318; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).;Sec23/Sec24 protein transport family protein transcript=eq;prot=eq; - 1 No
AT2G21630 ath Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT4G14160.2); Has 1585 Blast hits to 1570 proteins in 246 species: Archae - 0; Bacteria - 0; Metazoa - 525; Fungi - 514; Plants - 334; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink).;Sec23/Sec24 protein transport family protein transcript=eq;prot=eq; + 2 No
AT3G23660 ath Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT4G14160.2).;Sec23/Sec24 protein transport family protein transcript=eq;prot=eq; - 3 No
AT4G14160 ath Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT3G23660.1); Has 1490 Blast hits to 1472 proteins in 242 species: Archae - 0; Bacteria - 0; Metazoa - 529; Fungi - 429; Plants - 324; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).;Sec23/Sec24 protein transport family protein transcript=eq;prot=eq; + 4 No
AT5G43670 ath Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT3G23660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Sec23/Sec24 protein transport family protein transcript=eq;prot=eq; - 5 No
BD1G09100 bdi zinc ion binding (Blast2GO) pid=Bradi1g09100.1;tid=Bradi1g09100.1;GeneName=Bradi1g09100;transcript=eq;prot=eq - Bd1 No
BD3G38100 bdi zinc ion binding (Blast2GO) pid=Bradi3g38100.1;tid=Bradi3g38100.1;GeneName=Bradi3g38100;transcript=eq;prot=eq - Bd3 No
BD4G19570 bdi zinc ion binding (Blast2GO) pid=Bradi4g19570.1;tid=Bradi4g19570.1;GeneName=Bradi4g19570;transcript=eq;prot=eq + Bd4 No
BD4G32280 bdi zinc ion binding (Blast2GO) pid=Bradi4g32280.1;tid=Bradi4g32280.1;GeneName=Bradi4g32280;transcript=eq;prot=eq + Bd4 No
CP00146G00010 cpa name=evm.TU.supercontig_146.1;pid=evm.TU.supercontig_146.1;prot=eq;transcript=eq - supercontig_146 No
CP00157G00110 cpa name=evm.TU.supercontig_157.11;pid=evm.TU.supercontig_157.11;prot=eq;transcript=eq + supercontig_157 No
CP00375G00010 cpa name=evm.TU.supercontig_375.1;pid=evm.TU.supercontig_375.1;prot=eq;transcript=eq + supercontig_375 No
CP27826G00010 cpa name=evm.TU.contig_27826.1;pid=evm.TU.contig_27826.1;prot=eq;transcript=eq + contig_27826 No
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outlier