Gene family  

Sub-families
ORTHO008170 (22 genes in 20 species)
ORTHO010335 (19 genes in 14 species)
ORTHO012279 (16 genes in 12 species)
View all sub-families (13)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (7 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (7 genes)
gma
Glycine max (14 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (17 genes)
mes
Manihot esculenta (11 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (10 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (6 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (3 genes)



The gene family HOM000879 has 126 genes in 24 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 126 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G01950 aly name=fgenesh1_pm.C_scaffold_9000115;pid=333087;prot=eq;tid=333087 + scaffold_9 No
AL3G30070 aly name=fgenesh2_kg.3__2789__AT2G04430.1;pid=480088;prot=eq;tid=480088 + scaffold_3 No
AL3G30130 aly name=Al_scaffold_0003_2912;pid=874271;prot=eq;tid=905784 + scaffold_3 No
AL3G30140 aly name=fgenesh1_pm.C_scaffold_3002277;pid=319261;prot=eq;tid=319261 + scaffold_3 No
AL8G00230 aly name=fgenesh2_kg.8__25__AT5G47650.1;pid=494209;prot=eq;tid=494209 + scaffold_8 No
AL8G00660 aly name=Al_scaffold_0008_66;pid=883802;prot=eq;tid=915315 - scaffold_8 No
AT2G04430 ath nudix hydrolase homolog 5 (NUDT5); FUNCTIONS IN: hydrolase activity; LOCATED IN: cytosol; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), Nudix hydrolase 6-like (InterPro:IPR003293), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 6 (TAIR:AT2G04450.1); Has 2931 Blast hits to 2929 proteins in 813 species: Archae - 33; Bacteria - 1829; Metazoa - 186; Fungi - 19; Plants - 157; Viruses - 14; Other Eukaryotes - 693 (source: NCBI BLink).;nudix hydrolase homolog 5 transcript=eq;prot=eq; + 2 No
AT2G04440 ath MutT/nudix family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), Nudix hydrolase 6-like (InterPro:IPR003293); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 5 (TAIR:AT2G04430.1); Has 358 Blast hits to 334 proteins in 90 species: Archae - 0; Bacteria - 22; Metazoa - 109; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).;MutT/nudix family protein transcript=eq;prot=eq; + 2 No
AT2G04450 ath Encodes a protein with NADH pyrophosphatase activity. Although this protein was also shown to have ADP-ribose diphosphatase activity in vitro, mutant analyses suggest that NUDX6 is involved in NADH metabolism in vivo.;nudix hydrolase homolog 6 transcript=eq;prot=eq; + 2 No
AT4G12720 ath Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death.;MutT/nudix family protein transcript=eq;prot=eq; + 4 No
AT4G25434 ath nudix hydrolase homolog 10 (NUDT10); FUNCTIONS IN: ADP-ribose diphosphatase activity, NAD or NADH binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 2 (TAIR:AT5G47650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;nudix hydrolase homolog 10 transcript=eq;prot=eq; - 4 No
AT5G47240 ath nudix hydrolase homolog 8 (NUDT8); FUNCTIONS IN: hydrolase activity; INVOLVED IN: response to wounding; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), Nudix hydrolase 6-like (InterPro:IPR003293), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 2 (TAIR:AT5G47650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;nudix hydrolase homolog 8 transcript=eq;prot=eq; + 5 No
AT5G47650 ath Encodes an ADP-ribose pyrophosphatase that confers enhanced tolerance to oxidative stress.;nudix hydrolase homolog 2 transcript=eq;prot=eq; - 5 No
BD1G35490 bdi pid=Bradi1g35490.1;tid=Bradi1g35490.1;GeneName=Bradi1g35490;transcript=eq;prot=eq + Bd1 No
BD5G17500 bdi pid=Bradi5g17500.1;tid=Bradi5g17500.1;GeneName=Bradi5g17500;transcript=eq;prot=eq + Bd5 No
CP00012G01460 cpa name=evm.TU.supercontig_12.146;pid=evm.TU.supercontig_12.146;prot=eq;transcript=eq + supercontig_12 No
CP00027G02370 cpa name=evm.TU.supercontig_27.238;pid=evm.TU.supercontig_27.238;prot=eq;transcript=eq + supercontig_27 No
CP00078G00400 cpa name=evm.TU.supercontig_78.40;pid=evm.TU.supercontig_78.40;prot=eq;transcript=eq + supercontig_78 No
CP00089G00380 cpa name=evm.TU.supercontig_89.38;pid=evm.TU.supercontig_89.38;prot=eq;transcript=eq + supercontig_89 No
CP00136G00330 cpa name=evm.TU.supercontig_136.33;pid=evm.TU.supercontig_136.33;prot=eq;transcript=eq - supercontig_136 No
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