Gene family  

Sub-families
ORTHO000475 (57 genes in 24 species)
ORTHO023601 (5 genes in 5 species)
ORTHO027187 (4 genes in 3 species)
View all sub-families (10)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (6 genes)
gma
Glycine max (5 genes)
lja
Lotus japonicus (4 genes)
mes
Manihot esculenta (7 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (14 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ota
Ostreococcus tauri (4 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (8 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (7 genes)
vca
Volvox carteri (5 genes)
vvi
Vitis vinifera (8 genes)
zma
Zea mays (4 genes)



The gene family HOM000878 has 126 genes in 24 species (14 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 126 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G22170 aly name=fgenesh2_kg.1__2288__AT1G20960.1;pid=472334;prot=eq;tid=472334 - scaffold_1 No
AL4G29460 aly name=fgenesh2_kg.4__2378__AT2G42270.1;pid=483318;prot=eq;tid=483318 + scaffold_4 No
AL5G06850 aly name=scaffold_500731.1;pid=905027;prot=eq;tid=936540 - scaffold_5 No
AL5G08320 aly name=fgenesh1_pg.C_scaffold_5000651;pid=347259;prot=eq;tid=347259 + scaffold_5 No
AL7G36040 aly name=scaffold_703788.1;pid=916046;prot=eq;tid=947559 - scaffold_7 Yes
AL8G27320 aly name=scaffold_802754.1;pid=919354;prot=eq;tid=950867 + scaffold_8 No
AT1G20960 ath embryo defective 1507 (emb1507); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase (TAIR:AT2G42270.1); Has 19827 Blast hits to 11921 proteins in 1742 species: Archae - 1778; Bacteria - 7152; Metazoa - 2915; Fungi - 2450; Plants - 1068; Viruses - 118; Other Eukaryotes - 4346 (source: NCBI BLink).;U5 small nuclear ribonucleoprotein helicase, putative transcript=eq;prot=eq; - 1 No
AT2G42270 ath U5 small nuclear ribonucleoprotein helicase; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT1G20960.2); Has 20124 Blast hits to 12378 proteins in 1898 species: Archae - 1780; Bacteria - 8009; Metazoa - 2781; Fungi - 2333; Plants - 1088; Viruses - 52; Other Eukaryotes - 4081 (source: NCBI BLink).;U5 small nuclear ribonucleoprotein helicase transcript=eq;prot=eq; + 2 No
AT3G27730 ath DNA helicase required for interference-sensitive meiotic crossover events.;ATP binding;ATP-dependent helicases;DNA helicases transcript=eq;prot=eq; - 3 No
AT5G61140 ath Encodes a predicted protein with 30% identity with MER3/RCK.;U5 small nuclear ribonucleoprotein helicase transcript=eq;prot=eq; + 5 No
BD1G44490 bdi ATP-dependent RNA helicase activity (Blast2GO) pid=Bradi1g44490.1;tid=Bradi1g44490.1;GeneName=Bradi1g44490;transcript=eq;prot=eq + Bd1 No
BD1G44500 bdi ATP-dependent RNA helicase activity (Blast2GO) pid=Bradi1g44500.1;tid=Bradi1g44500.1;GeneName=Bradi1g44500;transcript=eq;prot=eq + Bd1 No
BD1G70057 bdi pid=Bradi1g70057.1;tid=Bradi1g70057.1;GeneName=Bradi1g70057;transcript=eq;prot=eq + Bd1 No
BD3G00980 bdi ATP-dependent RNA helicase activity (Blast2GO) pid=Bradi3g00980.1;tid=Bradi3g00980.1;GeneName=Bradi3g00980;transcript=eq;prot=eq + Bd3 No
BD3G48850 bdi ATP-dependent RNA helicase activity (Blast2GO) pid=Bradi3g48850.1;tid=Bradi3g48850.1;GeneName=Bradi3g48850;transcript=eq;prot=eq + Bd3 No
CP00036G01050 cpa name=evm.TU.supercontig_36.105;pid=evm.TU.supercontig_36.105;prot=eq;transcript=eq + supercontig_36 No
CP00094G00330 cpa name=evm.TU.supercontig_94.33;pid=evm.TU.supercontig_94.33;prot=eq;transcript=eq - supercontig_94 No
CP00094G00390 cpa name=evm.TU.supercontig_94.39;pid=evm.TU.supercontig_94.39;prot=eq;transcript=eq - supercontig_94 No
CP00108G00450 cpa name=evm.TU.supercontig_108.45;pid=evm.TU.supercontig_108.45;prot=eq;transcript=eq + supercontig_108 No
CP00108G00460 cpa name=evm.TU.supercontig_108.46;pid=evm.TU.supercontig_108.46;prot=eq;transcript=eq + supercontig_108 No
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