Gene family  

Sub-families
ORTHO003405 (29 genes in 22 species)
ORTHO003572 (29 genes in 24 species)
ORTHO003895 (28 genes in 25 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (4 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (9 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (8 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (4 genes)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (4 genes)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (8 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (6 genes)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (14 genes)



The gene family HOM000859 has 129 genes in 25 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 129 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G36320 aly name=fgenesh1_pg.C_scaffold_1003113;pid=336548;prot=eq;tid=336548 - scaffold_1 No
AL3G16660 aly name=fgenesh2_kg.3__1721__AT3G15660.2;pid=479020;prot=eq;tid=479020 - scaffold_3 No
AL3G28740 aly name=scaffold_303086.1;pid=899116;prot=eq;tid=930629 + scaffold_3 No
AL4G24470 aly name=scaffold_402527.1;pid=903026;prot=eq;tid=934539 - scaffold_4 No
AL5G25000 aly name=scaffold_502609.1;pid=906905;prot=eq;tid=938418 - scaffold_5 No
AL6G36800 aly name=scaffold_603813.1;pid=911756;prot=eq;tid=943269 - scaffold_6 No
AT2G38270 ath Encodes protein homologous to CXIP1. CXIP1 is a PICOT domain containing protein interacts with CAX1, a high capacity calcium transporter. However, CXP2 does not interact with CAX1 and only moderately activates another calcium transporter CAX4.;CAX-interacting protein 2 transcript=eq;prot=eq; - 2 No
AT3G15660 ath glutaredoxin 4 (GRX4); FUNCTIONS IN: metal ion binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin-related protein (InterPro:IPR004480), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT4G04950.1); Has 5304 Blast hits to 5116 proteins in 1283 species: Archae - 26; Bacteria - 2189; Metazoa - 461; Fungi - 314; Plants - 385; Viruses - 0; Other Eukaryotes - 1929 (source: NCBI BLink).;glutaredoxin 4 transcript=eq;prot=eq; - 3 No
AT3G54900 ath A.thaliana PICOT protein.It activates CAX1 gene Calcium transport activity.In other organisms, PICOT proteins appear to play a negative regulatory role in cellular stress responses.;CAX interacting protein 1 transcript=eq;prot=eq; - 3 No
AT4G04950 ath thioredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Glutaredoxin-related protein (InterPro:IPR004480); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT4G32580.1); Has 26535 Blast hits to 17137 proteins in 2757 species: Archae - 249; Bacteria - 14010; Metazoa - 1647; Fungi - 1426; Plants - 1759; Viruses - 3; Other Eukaryotes - 7441 (source: NCBI BLink).;thioredoxin family protein transcript=eq;prot=eq; - 4 No
AT4G32580 ath Thioredoxin superfamily protein; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Glutaredoxin-related protein (InterPro:IPR004480); BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT4G04950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Thioredoxin superfamily protein transcript=eq;prot=eq; - 4 Yes
BD1G01570 bdi protein kinase C binding (Blast2GO) pid=Bradi1g01570.1;tid=Bradi1g01570.1;GeneName=Bradi1g01570;transcript=eq;prot=eq - Bd1 No
BD1G08020 bdi protein kinase C binding (Blast2GO) pid=Bradi1g08020.1;tid=Bradi1g08020.1;GeneName=Bradi1g08020;transcript=eq;prot=eq - Bd1 No
BD2G04637 bdi pid=Bradi2g04637.1;tid=Bradi2g04637.1;GeneName=Bradi2g04637;transcript=eq;prot=eq + Bd2 No
BD3G30080 bdi protein kinase C binding (Blast2GO) pid=Bradi3g30080.1;tid=Bradi3g30080.1;GeneName=Bradi3g30080;transcript=eq;prot=eq + Bd3 No
BD4G45030 bdi protein kinase C binding (Blast2GO) pid=Bradi4g45030.1;tid=Bradi4g45030.1;GeneName=Bradi4g45030;transcript=eq;prot=eq + Bd4 No
CP00010G02010 cpa name=evm.TU.supercontig_10.201;pid=evm.TU.supercontig_10.201;prot=eq;transcript=eq - supercontig_10 No
CP00011G00850 cpa name=evm.TU.supercontig_11.86;pid=evm.TU.supercontig_11.86;prot=eq;transcript=eq + supercontig_11 No
CP00027G00460 cpa name=evm.TU.supercontig_27.47;pid=evm.TU.supercontig_27.47;prot=eq;transcript=eq - supercontig_27 No
CR01G09930 cre name=STE_estExt_fgenesh2_kg.C_10210;pid=195615;prot=eq;tid=195615;transcript=eq + chromosome_1 No
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