Gene family  

Sub-families
ORTHO005457 (25 genes in 18 species)
ORTHO008996 (21 genes in 12 species)
ORTHO011889 (16 genes in 13 species)
View all sub-families (11)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (5 genes)
gma
Glycine max (15 genes)
lja
Lotus japonicus (8 genes)
mdo
Malus domestica (9 genes)
mes
Manihot esculenta (7 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (6 genes)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (8 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (6 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (9 genes)



The gene family HOM000851 has 129 genes in 23 species (8 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 129 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G03870 aly name=scaffold_100410.1;pid=887616;prot=eq;tid=919129 - scaffold_1 No
AL2G01270 aly name=fgenesh2_kg.2__103__AT1G63820.1;pid=474973;prot=eq;tid=474973 + scaffold_2 No
AL3G13320 aly name=fgenesh2_kg.3__1351__AT3G12890.1;pid=478650;prot=eq;tid=478650 + scaffold_3 No
AL4G18570 aly name=fgenesh2_kg.4__1337__AT2G33350.1;pid=482277;prot=eq;tid=482277 + scaffold_4 No
AL7G36290 aly name=fgenesh2_kg.7__3273__AT5G41380.1;pid=493840;prot=eq;tid=493840 + scaffold_7 No
AL8G26170 aly name=scaffold_802636.1;pid=919236;prot=eq;tid=950749 - scaffold_8 No
AT1G04500 ath CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT2G33350.2); Has 1789 Blast hits to 1789 proteins in 111 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 2; Plants - 1654; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).;CCT motif family protein transcript=eq;prot=eq; - 1 No
AT1G63820 ath CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT5G41380.1); Has 1633 Blast hits to 1633 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1587; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).;CCT motif family protein transcript=eq;prot=eq; - 1 No
AT2G33350 ath CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT1G04500.1); Has 8037 Blast hits to 5335 proteins in 176 species: Archae - 8; Bacteria - 26; Metazoa - 23; Fungi - 132; Plants - 1672; Viruses - 0; Other Eukaryotes - 6176 (source: NCBI BLink).;CCT motif family protein transcript=eq;prot=eq; + 2 No
AT3G12890 ath Encodes a protein belonging to a class of CCT (CONSTANS, CONSTANS-like, TOC1) domain proteins. The protein contains a 43 amino acid-long sequence with high homology to the CCT domain but does not have any B-box or GATA-type zinc finger domains. Functions as a transcriptional activator and regulates the expression of at least a subset of sugar-inducible genes.;activator of spomin::LUC2 transcript=eq;prot=eq; + 3 No
AT5G41380 ath CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT1G63820.1); Has 1690 Blast hits to 1687 proteins in 111 species: Archae - 0; Bacteria - 2; Metazoa - 13; Fungi - 3; Plants - 1603; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).;CCT motif family protein transcript=eq;prot=eq; - 5 No
AT5G59990 ath CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT5G41380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;CCT motif family protein transcript=eq;prot=eq; - 5 No
BD1G75760 bdi pid=Bradi1g75760.1;tid=Bradi1g75760.1;GeneName=Bradi1g75760;transcript=eq;prot=eq + Bd1 No
BD2G22800 bdi pid=Bradi2g22800.1;tid=Bradi2g22800.1;GeneName=Bradi2g22800;transcript=eq;prot=eq + Bd2 No
BD2G54260 bdi Constans-like pid=Bradi2g54260.1;tid=Bradi2g54260.1;GeneName=Bradi2g54260;Name=BdC2C2 CCT CO-like;transcript=eq;prot=eq - Bd2 No
BD3G28290 bdi pid=Bradi3g28290.1;tid=Bradi3g28290.1;GeneName=Bradi3g28290;transcript=eq;prot=eq + Bd3 No
BD4G45330 bdi pid=Bradi4g45330.1;tid=Bradi4g45330.1;GeneName=Bradi4g45330;transcript=eq;prot=eq - Bd4 No
CP00044G00050 cpa name=evm.TU.supercontig_44.5;pid=evm.TU.supercontig_44.5;prot=eq;transcript=eq + supercontig_44 No
CP00139G00050 cpa name=evm.TU.supercontig_139.5;pid=evm.TU.supercontig_139.5;prot=eq;transcript=eq - supercontig_139 Yes
CP00180G00140 cpa name=evm.TU.supercontig_180.14;pid=evm.TU.supercontig_180.14;prot=eq;transcript=eq - supercontig_180 No
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