Gene family  

Sub-families
ORTHO000320 (68 genes in 25 species)
ORTHO027107 (4 genes in 4 species)
ORTHO050476 (2 genes in 2 species)
View all sub-families (7)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (5 genes)
fve
Fragaria vesca (5 genes)
gma
Glycine max (9 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (10 genes)
mes
Manihot esculenta (9 genes)
mrcc299
Micromonas sp. RCC299 (5 genes)
mtr
Medicago truncatula (5 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (10 genes)
vca
Volvox carteri (4 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (8 genes)



The gene family HOM000850 has 129 genes in 25 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 129 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G16570 aly name=fgenesh2_kg.1__1723__AT1G15740.1;pid=471769;prot=eq;tid=471769 + scaffold_1 No
AL3G33880 aly name=Al_scaffold_0003_3289;pid=874648;prot=eq;tid=906161 + scaffold_3 No
AT1G15740 ath Leucine-rich repeat family protein; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT4G23840.1); Has 38052 Blast hits to 19856 proteins in 856 species: Archae - 6; Bacteria - 8624; Metazoa - 11681; Fungi - 680; Plants - 12072; Viruses - 79; Other Eukaryotes - 4910 (source: NCBI BLink).;Leucine-rich repeat family protein transcript=eq;prot=eq; + 1 No
AT2G14255 ath Ankyrin repeat family protein with DHHC zinc finger domain; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein with DHHC zinc finger domain (TAIR:AT5G20350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Ankyrin repeat family protein with DHHC zinc finger domain transcript=eq;prot=eq; + 2 No
AT5G20350 ath Encodes a protein containing ankyrin and DHHC-CRD domain. Acts to restrict the size of the swelling that forms at the beginning of root hair cell growth, possibly by a mechanism that requires RHD1. Mutant displays defects in both root hair and pollen tube growth.;Ankyrin repeat family protein with DHHC zinc finger domain transcript=eq;prot=eq; + 5 No
BD1G30560 bdi palmitoyltransferase activity (Blast2GO) pid=Bradi1g30560.1;tid=Bradi1g30560.1;GeneName=Bradi1g30560;transcript=eq;prot=eq + Bd1 No
BD3G06210 bdi ATPase activity, coupled to transmembrane movement of substances (Blast2GO) pid=Bradi3g06210.1;tid=Bradi3g06210.1;GeneName=Bradi3g06210;transcript=eq;prot=eq - Bd3 No
BD3G48630 bdi ubiquitin-protein ligase activity (Blast2GO) pid=Bradi3g48630.1;tid=Bradi3g48630.1;GeneName=Bradi3g48630;transcript=eq;prot=eq - Bd3 No
BD4G16522 bdi pid=Bradi4g16522.1;tid=Bradi4g16522.1;GeneName=Bradi4g16522;transcript=eq;prot=eq - Bd4 No
BD5G14870 bdi ubiquitin-protein ligase activity (Blast2GO) pid=Bradi5g14870.1;tid=Bradi5g14870.1;GeneName=Bradi5g14870;transcript=eq;prot=eq - Bd5 No
CP00020G00610 cpa name=evm.TU.supercontig_20.61;pid=evm.TU.supercontig_20.61;prot=eq;transcript=eq + supercontig_20 No
CP00020G00620 cpa name=evm.TU.supercontig_20.62;pid=evm.TU.supercontig_20.62;prot=eq;transcript=eq + supercontig_20 No
CP00046G00690 cpa name=evm.TU.supercontig_46.69;pid=evm.TU.supercontig_46.69;prot=eq;transcript=eq + supercontig_46 No
CP00046G00710 cpa name=evm.TU.supercontig_46.71;pid=evm.TU.supercontig_46.71;prot=eq;transcript=eq + supercontig_46 No
CR02G09570 cre name=estExt_gwp_1W.C_790044;pid=140415;prot=eq;tid=140415;transcript=eq + chromosome_2 No
CR10G06380 cre name=estExt_gwp_1W.C_40075;pid=134676;prot=eq;tid=134676;transcript=eq - chromosome_10 No
CR12G13210 cre name=estExt_fgenesh1_pg.C_chromosome_120845;pid=346469;prot=eq;tid=346476;transcript=eq - chromosome_12 No
CR14G03560 cre name=estExt_gwp_1W.C_170087;pid=137210;prot=eq;tid=137210;transcript=eq - chromosome_14 No
CR18G01550 cre name=pasa_Sanger_mRNA33888;pid=411391;prot=eq;tid=424440;transcript=eq + scaffold_18 No
FV1G04120 fve F-box/LRR-repeat protein 14 (probable) transcript=eq;prot=eq;pid=gene30797 - LG1 No
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