Gene family  

Sub-families
ORTHO001431 (38 genes in 19 species)
ORTHO005637 (25 genes in 20 species)
ORTHO015568 (10 genes in 8 species)
View all sub-families (13)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (6 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (13 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (16 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (6 genes)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (10 genes)
rco
Ricinus communis (7 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (9 genes)



The gene family HOM000846 has 130 genes in 23 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 130 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G37810 aly name=fgenesh1_pm.C_scaffold_1002827;pid=314047;prot=eq;tid=314047 - scaffold_1 No
AL1G50300 aly name=scaffold_105361.1;pid=892567;prot=eq;tid=924080 - scaffold_1 No
AL2G27050 aly name=fgenesh1_pm.C_scaffold_2001749;pid=316716;prot=eq;tid=316716 + scaffold_2 No
AL3G13860 aly name=scaffold_301529.1;pid=897559;prot=eq;tid=929072 + scaffold_3 No
AL8G21640 aly name=Al_scaffold_0008_2062;pid=885798;prot=eq;tid=917311 + scaffold_8 No
AT1G36070 ath Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G78070.1); Has 24565 Blast hits to 12343 proteins in 577 species: Archae - 60; Bacteria - 7188; Metazoa - 6888; Fungi - 5026; Plants - 2359; Viruses - 0; Other Eukaryotes - 3044 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; - 1 No
AT1G55680 ath Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G13340.2); Has 20114 Blast hits to 9589 proteins in 506 species: Archae - 80; Bacteria - 6727; Metazoa - 4776; Fungi - 4188; Plants - 1687; Viruses - 0; Other Eukaryotes - 2656 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; - 1 No
AT1G78070 ath Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G36070.1); Has 25796 Blast hits to 12397 proteins in 585 species: Archae - 64; Bacteria - 7254; Metazoa - 7661; Fungi - 5235; Plants - 2447; Viruses - 0; Other Eukaryotes - 3135 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; + 1 No
AT3G13340 ath Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G55680.1); Has 21298 Blast hits to 10067 proteins in 523 species: Archae - 80; Bacteria - 6953; Metazoa - 5235; Fungi - 4425; Plants - 1789; Viruses - 0; Other Eukaryotes - 2816 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; + 3 No
AT5G56190 ath Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G13340.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; + 5 No
BD1G42960 bdi ATPase activity, coupled (Blast2GO) pid=Bradi1g42960.1;tid=Bradi1g42960.1;GeneName=Bradi1g42960;transcript=eq;prot=eq - Bd1 No
BD1G48090 bdi nucleoside-triphosphatase activity (Blast2GO) pid=Bradi1g48090.1;tid=Bradi1g48090.1;GeneName=Bradi1g48090;transcript=eq;prot=eq - Bd1 No
BD1G60960 bdi nucleoside-triphosphatase activity (Blast2GO) pid=Bradi1g60960.1;tid=Bradi1g60960.1;GeneName=Bradi1g60960;transcript=eq;prot=eq - Bd1 No
BD3G35550 bdi nucleoside-triphosphatase activity (Blast2GO) pid=Bradi3g35550.1;tid=Bradi3g35550.1;GeneName=Bradi3g35550;transcript=eq;prot=eq + Bd3 No
BD3G39450 bdi ATPase activity, coupled (Blast2GO) pid=Bradi3g39450.1;tid=Bradi3g39450.1;GeneName=Bradi3g39450;transcript=eq;prot=eq - Bd3 No
BD3G56640 bdi ATPase activity, coupled (Blast2GO) pid=Bradi3g56640.1;tid=Bradi3g56640.1;GeneName=Bradi3g56640;transcript=eq;prot=eq + Bd3 No
CP00008G02990 cpa name=evm.TU.supercontig_8.300;pid=evm.TU.supercontig_8.300;prot=eq;transcript=eq - supercontig_8 No
CP00012G00730 cpa name=evm.TU.supercontig_12.73;pid=evm.TU.supercontig_12.73;prot=eq;transcript=eq - supercontig_12 No
CP00036G01090 cpa name=evm.TU.supercontig_36.109;pid=evm.TU.supercontig_36.109;prot=eq;transcript=eq + supercontig_36 No
CR02G11690 cre name=e_gwW.23.30.1;pid=118469;prot=eq;tid=118469;transcript=eq + chromosome_2 No
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