Gene family  

Sub-families
ORTHO006064 (25 genes in 18 species)
ORTHO008336 (21 genes in 17 species)
ORTHO008828 (21 genes in 18 species)
View all sub-families (15)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (13 genes)
fve
Fragaria vesca (5 genes)
gma
Glycine max (9 genes)
lja
Lotus japonicus (9 genes)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (5 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (9 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (8 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (5 genes)



The gene family HOM000843 has 130 genes in 25 species (10 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 130 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G11740 aly name=scaffold_103100001.1;pid=920151;prot=eq;tid=951664 - scaffold_1031 No
AL1G19740 aly name=fgenesh2_kg.1__2057__AT1G18790.1;pid=472103;prot=eq;tid=472103 - scaffold_1 No
AL2G12480 aly name=fgenesh1_pg.C_scaffold_2000886;pid=338787;prot=eq;tid=338787 - scaffold_2 No
AL2G23370 aly name=fgenesh1_pg.C_scaffold_2001738;pid=339639;prot=eq;tid=339639 - scaffold_2 No
AL7G05290 aly name=fgenesh2_kg.7__520__AT4G35590.1;pid=491087;prot=eq;tid=491087 - scaffold_7 No
AL8G17600 aly name=fgenesh1_pm.C_scaffold_8001005;pid=331662;prot=eq;tid=331662 - scaffold_8 No
AL8G33550 aly name=fgenesh1_pg.C_scaffold_8002648;pid=358861;prot=eq;tid=358861 + scaffold_8 No
AT1G18790 ath RWP-RK domain-containing protein; CONTAINS InterPro DOMAIN/s: Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT1G74480.1); Has 558 Blast hits to 554 proteins in 54 species: Archae - 0; Bacteria - 12; Metazoa - 59; Fungi - 0; Plants - 419; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).;RWP-RK domain-containing protein transcript=eq;prot=eq; - 1 No
AT1G74480 ath RWP-RK domain-containing protein; CONTAINS InterPro DOMAIN/s: Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT1G18790.1); Has 474 Blast hits to 470 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 7; Plants - 395; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).;RWP-RK domain-containing protein transcript=eq;prot=eq; - 1 No
AT4G35590 ath RWP-RK domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, LP.12 twelve leaves visible, D bilateral stage; CONTAINS InterPro DOMAIN/s: Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT5G66990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;RWP-RK domain-containing protein transcript=eq;prot=eq; + 4 No
AT5G53040 ath RWP-RK domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT5G66990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;RWP-RK domain-containing protein transcript=eq;prot=eq; - 5 No
AT5G66990 ath RWP-RK domain-containing protein; CONTAINS InterPro DOMAIN/s: Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT1G74480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;RWP-RK domain-containing protein transcript=eq;prot=eq; - 5 No
BD2G40920 bdi pid=Bradi2g40920.1;tid=Bradi2g40920.1;GeneName=Bradi2g40920;transcript=eq;prot=eq - Bd2 No
BD2G61760 bdi pid=Bradi2g61760.1;tid=Bradi2g61760.1;GeneName=Bradi2g61760;transcript=eq;prot=eq - Bd2 No
BD3G59410 bdi pid=Bradi3g59410.1;tid=Bradi3g59410.1;GeneName=Bradi3g59410;transcript=eq;prot=eq + Bd3 No
BD3G59420 bdi pid=Bradi3g59420.1;tid=Bradi3g59420.1;GeneName=Bradi3g59420;transcript=eq;prot=eq + Bd3 No
BD5G18430 bdi pid=Bradi5g18430.1;tid=Bradi5g18430.1;GeneName=Bradi5g18430;transcript=eq;prot=eq - Bd5 No
CP00003G01020 cpa name=evm.TU.supercontig_3.102;pid=evm.TU.supercontig_3.102;prot=eq;transcript=eq - supercontig_3 No
CP00006G03360 cpa name=evm.TU.supercontig_6.337;pid=evm.TU.supercontig_6.337;prot=eq;transcript=eq - supercontig_6 Yes
CP00423G00070 cpa name=evm.TU.supercontig_423.7;pid=evm.TU.supercontig_423.7;prot=eq;transcript=eq - supercontig_423 No
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