Gene family  

Sub-families
ORTHO003750 (28 genes in 17 species)
ORTHO011799 (16 genes in 11 species)
ORTHO012701 (15 genes in 12 species)
View all sub-families (11)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (4 genes)
fve
Fragaria vesca (8 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (20 genes)
mdo
Malus domestica (9 genes)
mes
Manihot esculenta (7 genes)
mtr
Medicago truncatula (8 genes)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (10 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (5 genes)
tca
Theobroma cacao (6 genes)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (6 genes)



The gene family HOM000837 has 131 genes in 19 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 131 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G25350 aly name=Al_scaffold_0001_2476;pid=880709;prot=eq;tid=912222 + scaffold_1 No
AL1G33490 aly name=fgenesh2_kg.1__3367__AT1G32230.1;pid=473413;prot=eq;tid=473413 + scaffold_1 No
AL2G18950 aly name=fgenesh2_kg.2__1294__AT1G70440.1;pid=476164;prot=eq;tid=476164 - scaffold_2 No
AL4G20880 aly name=fgenesh2_kg.4__1571__AT2G35510.1;pid=482511;prot=eq;tid=482511 - scaffold_4 No
AL5G16490 aly name=fgenesh1_pm.C_scaffold_5000924;pid=323380;prot=eq;tid=323380 + scaffold_5 No
AL8G01640 aly name=Al_scaffold_0008_165;pid=883901;prot=eq;tid=915414 - scaffold_8 No
AT1G23550 ath Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.;similar to RCD one 2 transcript=eq;prot=eq; + 1 No
AT1G32230 ath Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family. Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants. Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm.;WWE protein-protein interaction domain protein family transcript=eq;prot=eq; + 1 No
AT1G70440 ath Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.;similar to RCD one 3 transcript=eq;prot=eq; - 1 No
AT2G35510 ath Encodes a WWE domain-containing protein with 76% similarity to RCD1. The protein also contains a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.;similar to RCD one 1 transcript=eq;prot=eq; - 2 No
AT3G47720 ath Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.;similar to RCD one 4 transcript=eq;prot=eq; + 3 No
AT5G62520 ath Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.;similar to RCD one 5 transcript=eq;prot=eq; + 5 No
BD1G01170 bdi NAD+ ADP-ribosyltransferase activity (Blast2GO) pid=Bradi1g01170.1;tid=Bradi1g01170.1;GeneName=Bradi1g01170;transcript=eq;prot=eq - Bd1 No
BD1G01340 bdi NAD+ ADP-ribosyltransferase activity (Blast2GO) pid=Bradi1g01340.1;tid=Bradi1g01340.1;GeneName=Bradi1g01340;transcript=eq;prot=eq + Bd1 No
BD1G63360 bdi NAD+ ADP-ribosyltransferase activity (Blast2GO) pid=Bradi1g63360.1;tid=Bradi1g63360.1;GeneName=Bradi1g63360;transcript=eq;prot=eq - Bd1 No
BD1G69140 bdi NAD+ ADP-ribosyltransferase activity (Blast2GO) pid=Bradi1g69140.1;tid=Bradi1g69140.1;GeneName=Bradi1g69140;transcript=eq;prot=eq + Bd1 No
BD2G10720 bdi pid=Bradi2g10720.1;tid=Bradi2g10720.1;GeneName=Bradi2g10720;transcript=eq;prot=eq + Bd2 No
BD3G34250 bdi NAD+ ADP-ribosyltransferase activity (Blast2GO) pid=Bradi3g34250.1;tid=Bradi3g34250.1;GeneName=Bradi3g34250;transcript=eq;prot=eq - Bd3 No
BD5G25800 bdi NAD+ ADP-ribosyltransferase activity, nuclear hormone receptor binding (Blast2GO) pid=Bradi5g25800.1;tid=Bradi5g25800.1;GeneName=Bradi5g25800;transcript=eq;prot=eq - Bd5 No
CP00076G00560 cpa name=evm.TU.supercontig_76.56;pid=evm.TU.supercontig_76.56;prot=eq;transcript=eq + supercontig_76 No
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