Gene family  

Sub-families
ORTHO000578 (53 genes in 25 species)
ORTHO005780 (25 genes in 18 species)
ORTHO015292 (10 genes in 5 species)
View all sub-families (8)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (8 genes)
ath
Arabidopsis thaliana (8 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (12 genes)
gma
Glycine max (11 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (11 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (7 genes)
ptr
Populus trichocarpa (8 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (7 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (7 genes)



The gene family HOM000833 has 131 genes in 25 species (7 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 131 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G20220 aly name=fgenesh2_kg.1__2103__AT1G19270.1;pid=472149;prot=eq;tid=472149 + scaffold_1 No
AL1G36430 aly name=scaffold_103905.1;pid=891111;prot=eq;tid=922624 - scaffold_1 No
AL4G26440 aly name=fgenesh1_pm.C_scaffold_4001729;pid=321672;prot=eq;tid=321672 - scaffold_4 No
AL7G03910 aly name=fgenesh1_pm.C_scaffold_7000309;pid=328082;prot=eq;tid=328082 + scaffold_7 No
AL8G34010 aly name=fgenesh1_pg.C_scaffold_8002683;pid=358896;prot=eq;tid=358896 - scaffold_8 No
AL8G34020 aly name=fgenesh2_kg.8__2755__AT5G66640.1;pid=496939;prot=eq;tid=496939 - scaffold_8 No
AL8G34040 aly name=Al_scaffold_0008_3264;pid=887000;prot=eq;tid=918513 - scaffold_8 No
AL8G34050 aly name=fgenesh2_kg.8__2758__AT5G66610.1;pid=496942;prot=eq;tid=496942 - scaffold_8 No
AT1G19270 ath DA1 (DA1); CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Ubiquitin interacting motif (InterPro:IPR003903), Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT4G36860.1); Has 3538 Blast hits to 2617 proteins in 167 species: Archae - 0; Bacteria - 18; Metazoa - 3009; Fungi - 63; Plants - 177; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).;DA1 transcript=eq;prot=eq; + 1 No
AT2G39830 ath DA1-related protein 2 (DAR2); FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT4G36860.1); Has 1539 Blast hits to 1276 proteins in 109 species: Archae - 0; Bacteria - 10; Metazoa - 1178; Fungi - 26; Plants - 170; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).;DA1-related protein 2 transcript=eq;prot=eq; - 2 No
AT4G36860 ath LIM domain-containing protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Ubiquitin interacting motif (InterPro:IPR003903), Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: DA1 (TAIR:AT1G19270.1); Has 6004 Blast hits to 4271 proteins in 323 species: Archae - 7; Bacteria - 228; Metazoa - 4096; Fungi - 190; Plants - 320; Viruses - 67; Other Eukaryotes - 1096 (source: NCBI BLink).;LIM domain-containing protein transcript=eq;prot=eq; - 4 No
AT5G17890 ath Encodes a protein that appears to be involved in defense responses. Contains TIR, NB-LRR and LIM domains. A gain of function allele exhibits cold dependent phenotypes including apparent activation of defense responses and an increased freezing tolerance.;DA1-related protein 4 transcript=eq;prot=eq; + 5 No
AT5G66610 ath DA1-related protein 7 (DAR7); FUNCTIONS IN: zinc ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: DA1-related protein 6 (TAIR:AT5G66620.1).;DA1-related protein 7 transcript=eq;prot=eq; + 5 No
AT5G66620 ath DA1-related protein 6 (DAR6); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Ubiquitin interacting motif (InterPro:IPR003903), Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: DA1-related protein 5 (TAIR:AT5G66630.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;DA1-related protein 6 transcript=eq;prot=eq; + 5 No
AT5G66630 ath DA1-related protein 5 (DAR5); FUNCTIONS IN: zinc ion binding, ATP binding; INVOLVED IN: apoptosis; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), NB-ARC (InterPro:IPR002182), Powdery mildew resistance protein, RPW8 domain (InterPro:IPR008808), Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: DA1-related protein 6 (TAIR:AT5G66620.1); Has 1986 Blast hits to 1972 proteins in 186 species: Archae - 0; Bacteria - 28; Metazoa - 152; Fungi - 18; Plants - 1741; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).;DA1-related protein 5 transcript=eq;prot=eq; + 5 No
AT5G66640 ath DA1-related protein 3 (DAR3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: DA1-related protein 6 (TAIR:AT5G66620.1).;DA1-related protein 3 transcript=eq;prot=eq; + 5 No
BD1G14360 bdi pid=Bradi1g14360.1;tid=Bradi1g14360.1;GeneName=Bradi1g14360;transcript=eq;prot=eq - Bd1 No
BD1G66980 bdi zinc ion binding (Blast2GO) pid=Bradi1g66980.1;tid=Bradi1g66980.1;GeneName=Bradi1g66980;transcript=eq;prot=eq + Bd1 No
BD4G02760 bdi zinc ion binding (Blast2GO) pid=Bradi4g02760.1;tid=Bradi4g02760.1;GeneName=Bradi4g02760;transcript=eq;prot=eq - Bd4 No
BD4G42580 bdi zinc ion binding (Blast2GO) pid=Bradi4g42580.1;tid=Bradi4g42580.1;GeneName=Bradi4g42580;transcript=eq;prot=eq - Bd4 No
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