Gene family  

Sub-families
ORTHO000939 (44 genes in 25 species)
ORTHO003376 (29 genes in 22 species)
ORTHO022055 (5 genes in 5 species)
View all sub-families (11)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (7 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (26 genes)
mes
Manihot esculenta (8 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (9 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (11 genes)
rco
Ricinus communis (8 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (6 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (5 genes)



The gene family HOM000832 has 131 genes in 25 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 131 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G04810 aly name=Al_scaffold_0003_463;pid=871822;prot=eq;tid=903335 - scaffold_3 No
AL3G06450 aly name=fgenesh2_kg.3__639__AT3G06350.1;pid=477938;prot=eq;tid=477938 - scaffold_3 No
AT3G05000 ath Transport protein particle (TRAPP) component; CONTAINS InterPro DOMAIN/s: Transport protein particle (TRAPP) component (InterPro:IPR007194); Has 457 Blast hits to 457 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 137; Plants - 66; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).;Transport protein particle (TRAPP) component transcript=eq;prot=eq; - 3 No
AT3G06350 ath MATERNAL EFFECT EMBRYO ARREST 32 (MEE32); FUNCTIONS IN: NADP or NADPH binding, 3-dehydroquinate dehydratase activity, shikimate 5-dehydrogenase activity, binding, catalytic activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase (InterPro:IPR006151), Aldolase-type TIM barrel (InterPro:IPR013785), Quinate/shikimate 5-dehydrogenase (InterPro:IPR011342), NAD(P)-binding domain (InterPro:IPR016040), Dehydroquinase class I (InterPro:IPR001381), Shikimate dehydrogenase substrate binding, N-terminal (InterPro:IPR013708); Has 14455 Blast hits to 14453 proteins in 2669 species: Archae - 507; Bacteria - 10604; Metazoa - 0; Fungi - 391; Plants - 114; Viruses - 0; Other Eukaryotes - 2839 (source: NCBI BLink).;dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative transcript=eq;prot=eq; - 3 No
BD2G13170 bdi 3-dehydroquinate dehydratase activity, shikimate 5-dehydrogenase activity (Blast2GO) pid=Bradi2g13170.1;tid=Bradi2g13170.1;GeneName=Bradi2g13170;transcript=eq;prot=eq + Bd2 No
BD3G29110 bdi pid=Bradi3g29110.1;tid=Bradi3g29110.1;GeneName=Bradi3g29110;transcript=eq;prot=eq - Bd3 No
BD4G05897 bdi pid=Bradi4g05897.1;tid=Bradi4g05897.1;GeneName=Bradi4g05897;transcript=eq;prot=eq + Bd4 No
BD4G07940 bdi pid=Bradi4g07940.1;tid=Bradi4g07940.1;GeneName=Bradi4g07940;transcript=eq;prot=eq - Bd4 No
CP00016G00990 cpa name=evm.TU.supercontig_16.99;pid=evm.TU.supercontig_16.99;prot=eq;transcript=eq - supercontig_16 No
CP00117G00100 cpa name=evm.TU.supercontig_117.10;pid=evm.TU.supercontig_117.10;prot=eq;transcript=eq - supercontig_117 No
CR08G04550 cre name=MHS_e_gwW.21.19.1;pid=196935;prot=eq;tid=196940;transcript=eq + chromosome_8 No
CR16G03290 cre name=fgenesh1_kg.C_scaffold_67000037;pid=5404;prot=eq;tid=5404;transcript=eq - chromosome_16 No
FV0G23740 fve Shikimate dehydrogenase, Precursor (similar to) transcript=eq;prot=eq;pid=gene16394 - scf0513168 No
FV0G24000 fve Trafficking protein particle complex subunit 6B (probable) transcript=eq;prot=eq;pid=gene16419 - scf0513168 No
FV1G19500 fve Shikimate dehydrogenase, Precursor (similar to) transcript=eq;prot=eq;pid=gene21107 - LG1 No
FV1G19520 fve Shikimate dehydrogenase, Precursor (similar to) transcript=eq;prot=eq;pid=gene21109 - LG1 No
FV6G07230 fve Shikimate dehydrogenase, Precursor (similar to) transcript=eq;prot=eq;pid=gene22235 - LG6 No
FV6G07240 fve Shikimate dehydrogenase, Precursor (similar to) transcript=eq;prot=eq;pid=gene22236 - LG6 No
FV6G07330 fve Shikimate dehydrogenase, Precursor (similar to) transcript=eq;prot=eq;pid=gene22244 + LG6 No
GM00G00020 gma 22 pid=16242644;transcript=eq;prot=eq;name=Glyma0022s00200.1 + scaffold_22 No
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