Gene family  

Sub-families
ORTHO001382 (39 genes in 24 species)
ORTHO001885 (35 genes in 23 species)
ORTHO004868 (26 genes in 22 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (11 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (6 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (5 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (9 genes)
mdo
Malus domestica (11 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (5 genes)
olu
Ostreococcus lucimarinus (4 genes)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (7 genes)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (6 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (5 genes)



The gene family HOM000825 has 132 genes in 25 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 132 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G09530 aly name=scaffold_59400002.1;pid=920810;prot=eq;tid=952323 - scaffold_594 No
AL1G31430 aly name=scaffold_103374.1;pid=890580;prot=eq;tid=922093 + scaffold_1 No
AL3G30840 aly name=Al_scaffold_0003_2974;pid=874333;prot=eq;tid=905846 - scaffold_3 No
AL5G15640 aly name=fgenesh1_pm.C_scaffold_5000863;pid=323319;prot=eq;tid=323319 + scaffold_5 No
AL6G01620 aly name=scaffold_600169.1;pid=908112;prot=eq;tid=939625 - scaffold_6 No
AL6G37370 aly name=scaffold_603862.1;pid=911805;prot=eq;tid=943318 + scaffold_6 No
AL7G15280 aly name=fgenesh1_pm.C_scaffold_7001241;pid=329014;prot=eq;tid=329014 - scaffold_7 No
AL7G21610 aly name=fgenesh2_kg.7__2210__AT4G21100.1;pid=492777;prot=eq;tid=492777 + scaffold_7 No
AL8G20690 aly name=fgenesh2_kg.8__1431__AT5G55300.1;pid=495615;prot=eq;tid=495615 - scaffold_8 No
AL8G20700 aly name=scaffold_802074.1;pid=918674;prot=eq;tid=950187 - scaffold_8 No
AL8G21390 aly name=Al_scaffold_0008_2038;pid=885774;prot=eq;tid=917287 + scaffold_8 Yes
AT1G30380 ath Encodes subunit K of photosystem I reaction center.;photosystem I subunit K transcript=eq;prot=eq; + 1 No
AT4G05420 ath Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis.;damaged DNA binding protein 1A transcript=eq;prot=eq; + 4 No
AT4G21100 ath One of two closely related genes similar to a damaged DNA binding protein originally described in mammals. May form a complex with DET1 to regulate photomorphogenesis. Loss of function mutations are lethal. The DDB1b protein binds with a number of DWD-containing proteins and may form part of a CUL4-based E3 ubiquitin ligase.;damaged DNA binding protein 1B transcript=eq;prot=eq; - 4 No
AT4G26701 ath DNA binding;DNA topoisomerase type Is; FUNCTIONS IN: DNA topoisomerase type I activity, DNA binding; INVOLVED IN: DNA topological change, DNA unwinding involved in replication; LOCATED IN: chromosome; CONTAINS InterPro DOMAIN/s: DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727); BEST Arabidopsis thaliana protein match is: DNA topoisomerase I alpha (TAIR:AT5G55300.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;DNA binding;DNA topoisomerase type Is transcript=eq;prot=eq; + 4 No
AT5G55300 ath Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. Functions in stem cell maintenance at all stages of shoot and floral meristems and in the regulation of gene silencing.;DNA topoisomerase I alpha transcript=eq;prot=eq; - 5 No
AT5G55310 ath Encodes one of two Arabidopsis type-I DNA topoisomerase I genes. Reducing the level of expression of this gene in a top1alpha (At5g55300) mutant background causes seedling lethality.;DNA topoisomerase 1 beta transcript=eq;prot=eq; - 5 No
BD1G58350 bdi pid=Bradi1g58350.1;tid=Bradi1g58350.1;GeneName=Bradi1g58350;transcript=eq;prot=eq + Bd1 No
BD2G14440 bdi pid=Bradi2g14440.1;tid=Bradi2g14440.1;GeneName=Bradi2g14440;transcript=eq;prot=eq - Bd2 No
BD2G32190 bdi pid=Bradi2g32190.1;tid=Bradi2g32190.1;GeneName=Bradi2g32190;transcript=eq;prot=eq - Bd2 No
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