Gene family  

Sub-families
ORTHO002994 (30 genes in 22 species)
ORTHO007038 (23 genes in 16 species)
ORTHO013147 (14 genes in 11 species)
View all sub-families (15)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (8 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (6 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (4 genes)
gma
Glycine max (10 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (19 genes)
mes
Manihot esculenta (11 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (8 genes)
ptr
Populus trichocarpa (8 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (6 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (7 genes)



The gene family HOM000818 has 133 genes in 25 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 133 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G17480 aly name=fgenesh2_kg.2__1179__AT1G69230.1;pid=476049;prot=eq;tid=476049 - scaffold_2 No
AL3G01260 aly name=fgenesh2_kg.3__150__AT3G02180.1;pid=477449;prot=eq;tid=477449 + scaffold_3 No
AL3G01280 aly name=scaffold_300154.1;pid=896184;prot=eq;tid=927697 + scaffold_3 No
AL5G03320 aly name=fgenesh1_pm.C_scaffold_5000209;pid=322665;prot=eq;tid=322665 + scaffold_5 No
AL6G15450 aly name=fgenesh2_kg.6__1538__AT5G15600.1;pid=488404;prot=eq;tid=488404 + scaffold_6 No
AL6G15460 aly name=fgenesh2_kg.6__1540__AT5G15610.2;pid=488406;prot=eq;tid=488406 + scaffold_6 No
AL7G18690 aly name=fgenesh2_kg.7__1954__AT4G23496.1;pid=492521;prot=eq;tid=492521 + scaffold_7 No
AT1G26355 ath SPIRAL1-LIKE1 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. GUS expression was detected only in pollen; however, no endogenous transcript was found.;SPIRAL1-like1 transcript=eq;prot=eq; - 1 No
AT1G69230 ath SPIRAL1-LIKE2 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root and organ growth as a result of defective anisotropic cell expansion.;SPIRAL1-like2 transcript=eq;prot=eq; - 1 No
AT2G03680 ath The SPR1 gene encodes a plant-specific 12-kD protein which has a repeated motif at both ends, separated by a predicted rod-like domain, suggesting that it may act as an intermolecular linker. Ubiquitously expressed and belongs to a six-member gene family in Arabidopsis; expressed in transgenic seedlings localized to microtubules within the cortical array, preprophase band, phragmoplast, and mitotic spindle.;spiral1 transcript=eq;prot=eq; + 2 No
AT3G02180 ath SPIRAL1-LIKE3 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.;SPIRAL1-like3 transcript=eq;prot=eq; + 3 No
AT3G02200 ath Proteasome component (PCI) domain protein; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: Proteasome component (PCI) domain protein (TAIR:AT5G15610.2); Has 657 Blast hits to 657 proteins in 209 species: Archae - 0; Bacteria - 2; Metazoa - 271; Fungi - 161; Plants - 136; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).;Proteasome component (PCI) domain protein transcript=eq;prot=eq; + 3 No
AT4G23496 ath Belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.;SPIRAL1-like5 transcript=eq;prot=eq; - 4 No
AT5G15600 ath SPIRAL1-LIKE4 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.;SPIRAL1-like4 transcript=eq;prot=eq; + 5 No
AT5G15610 ath Proteasome component (PCI) domain protein; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: Proteasome component (PCI) domain protein (TAIR:AT3G02200.2); Has 426 Blast hits to 426 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 114; Plants - 66; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).;Proteasome component (PCI) domain protein transcript=eq;prot=eq; + 5 No
BD0G00220 bdi pid=Bradi0018s00200.4;tid=Bradi0018s00200.4;GeneName=Bradi0018s00200;transcript=eq;prot=eq + scaffold_18 No
BD1G22100 bdi pid=Bradi1g22100.2;tid=Bradi1g22100.2;GeneName=Bradi1g22100;transcript=eq;prot=eq - Bd1 No
BD5G02340 bdi pid=Bradi5g02340.1;tid=Bradi5g02340.1;GeneName=Bradi5g02340;transcript=eq;prot=eq + Bd5 No
CP00001G01370 cpa name=evm.TU.supercontig_1.137;pid=evm.TU.supercontig_1.137;prot=eq;transcript=eq + supercontig_1 No
CP00014G01970 cpa name=evm.TU.supercontig_14.197;pid=evm.TU.supercontig_14.197;prot=eq;transcript=eq + supercontig_14 No
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