Gene family  

Sub-families
ORTHO002906 (30 genes in 25 species)
ORTHO005647 (25 genes in 17 species)
ORTHO010234 (19 genes in 17 species)
View all sub-families (7)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (11 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (11 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (7 genes)
osaindica
Oryza sativa ssp. indica (8 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (10 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (11 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (11 genes)



The gene family HOM000813 has 134 genes in 25 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 134 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G09590 aly name=fgenesh2_kg.1__1041__AT1G09830.1;pid=471087;prot=eq;tid=471087 - scaffold_1 No
AL3G00970 aly name=scaffold_300118.1;pid=896148;prot=eq;tid=927661 - scaffold_3 No
AL6G24020 aly name=fgenesh2_kg.6__2404__AT5G24130.1;pid=489270;prot=eq;tid=489270 + scaffold_6 No
AL8G17780 aly name=fgenesh2_kg.8__1206__AT5G53180.1;pid=495390;prot=eq;tid=495390 - scaffold_8 No
AT1G09830 ath glycinamide ribonucleotide synthetase (GAR synthetase) that catalyzes the conversion of phosphoribosyl amine to phosphoribosyl glycineamide;Glycinamide ribonucleotide (GAR) synthetase transcript=eq;prot=eq; - 1 No
AT3G01150 ath Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.;polypyrimidine tract-binding protein 1 transcript=eq;prot=eq; + 3 No
AT5G24130 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). transcript=eq;prot=eq; + 5 No
AT5G53180 ath Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.;polypyrimidine tract-binding protein 2 transcript=eq;prot=eq; - 5 No
BD1G61200 bdi RRM domain containing protein similar to polypyrimidine tract-binding protein 1, AtPTB1, [Arabidopsis thaliana] AT3G01150 pid=Bradi1g61200.1;tid=Bradi1g61200.1;GeneName=Bradi1g61200;transcript=eq;prot=eq - Bd1 No
BD2G14780 bdi pid=Bradi2g14780.1;tid=Bradi2g14780.1;GeneName=Bradi2g14780;transcript=eq;prot=eq - Bd2 No
BD2G16170 bdi phosphoribosylglycinamide formyltransferase activity (Blast2GO) pid=Bradi2g16170.1;tid=Bradi2g16170.1;GeneName=Bradi2g16170;transcript=eq;prot=eq + Bd2 No
BD2G43760 bdi RRM domain containing protein similar to polypyrimidine tract-binding protein ATPTB2, [Arabidopsis thaliana] AT5G53180 pid=Bradi2g43760.1;tid=Bradi2g43760.1;GeneName=Bradi2g43760;transcript=eq;prot=eq - Bd2 No
BD3G09650 bdi pid=Bradi3g09650.1;tid=Bradi3g09650.1;GeneName=Bradi3g09650;transcript=eq;prot=eq - Bd3 No
BD3G36770 bdi RRM domain containing protein similar to polypyrimidine tract-binding (PTB) protein, [Arabidopsis thaliana] AT3G01150 pid=Bradi3g36770.1;tid=Bradi3g36770.1;GeneName=Bradi3g36770;transcript=eq;prot=eq - Bd3 No
BD4G21820 bdi phosphoribosylglycinamide formyltransferase activity (Blast2GO) pid=Bradi4g21820.1;tid=Bradi4g21820.1;GeneName=Bradi4g21820;transcript=eq;prot=eq + Bd4 No
CP00003G00580 cpa name=evm.TU.supercontig_3.58;pid=evm.TU.supercontig_3.58;prot=eq;transcript=eq + supercontig_3 No
CP00034G01440 cpa name=evm.TU.supercontig_34.144;pid=evm.TU.supercontig_34.144;prot=eq;transcript=eq + supercontig_34 No
CP00113G00300 cpa name=evm.TU.supercontig_113.30;pid=evm.TU.supercontig_113.30;prot=eq;transcript=eq + supercontig_113 No
CP28755G00010 cpa name=evm.TU.contig_28755.1;pid=evm.TU.contig_28755.1;prot=eq;transcript=eq + contig_28755 No
CR31G00200 cre name=pasa_Sanger_mRNA35477;pid=408053;prot=eq;tid=426044;transcript=eq + scaffold_31 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier