Gene family  

Sub-families
ORTHO003285 (29 genes in 23 species)
ORTHO003849 (28 genes in 23 species)
ORTHO007723 (22 genes in 18 species)
View all sub-families (9)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (7 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (6 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (5 genes)
gma
Glycine max (10 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (14 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (11 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (8 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (5 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (10 genes)



The gene family HOM000798 has 136 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 136 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G09470 aly name=fgenesh2_kg.1__1031__AT1G09760.1;pid=471077;prot=eq;tid=471077 - scaffold_1 No
AL1G50790 aly name=fgenesh1_pm.C_scaffold_1003589;pid=314809;prot=eq;tid=314809 - scaffold_1 No
AL2G00030 aly name=scaffold_200003.1;pid=892929;prot=eq;tid=924442 + scaffold_2 No
AL3G13520 aly name=Al_scaffold_0003_1329;pid=872688;prot=eq;tid=904201 + scaffold_3 No
AL3G25520 aly name=fgenesh1_pm.C_scaffold_3002043;pid=319027;prot=eq;tid=319027 - scaffold_3 No
AL7G29790 aly name=fgenesh2_kg.7__2889__AT4G14500.1;pid=493456;prot=eq;tid=493456 - scaffold_7 No
AL8G19300 aly name=scaffold_801936.1;pid=918536;prot=eq;tid=950049 - scaffold_8 No
AT1G09760 ath U2 small nuclear ribonucleoprotein A (U2A'); INVOLVED IN: nuclear mRNA splicing, via spliceosome, response to cold; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U2A'/phosphoprotein 32 family A, C-terminal (InterPro:IPR003603); Has 8109 Blast hits to 6297 proteins in 450 species: Archae - 0; Bacteria - 3635; Metazoa - 3194; Fungi - 303; Plants - 219; Viruses - 2; Other Eukaryotes - 756 (source: NCBI BLink).;U2 small nuclear ribonucleoprotein A transcript=eq;prot=eq; - 1 No
AT1G55960 ath Polyketide cyclase/dehydrase and lipid transport superfamily protein; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G13062.1); Has 265 Blast hits to 265 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).;Polyketide cyclase/dehydrase and lipid transport superfamily protein transcript=eq;prot=eq; - 1 No
AT1G64720 ath membrane related protein CP5;Polyketide cyclase/dehydrase and lipid transport superfamily protein transcript=eq;prot=eq; - 1 No
AT3G13062 ath Polyketide cyclase/dehydrase and lipid transport superfamily protein; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G55960.1); Has 330 Blast hits to 330 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).;Polyketide cyclase/dehydrase and lipid transport superfamily protein transcript=eq;prot=eq; + 3 No
AT3G23080 ath Polyketide cyclase/dehydrase and lipid transport superfamily protein; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT4G14500.1); Has 367 Blast hits to 366 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).;Polyketide cyclase/dehydrase and lipid transport superfamily protein transcript=eq;prot=eq; - 3 No
AT4G14500 ath Polyketide cyclase/dehydrase and lipid transport superfamily protein; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G23080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Polyketide cyclase/dehydrase and lipid transport superfamily protein transcript=eq;prot=eq; + 4 No
AT5G54170 ath Polyketide cyclase/dehydrase and lipid transport superfamily protein; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G64720.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Polyketide cyclase/dehydrase and lipid transport superfamily protein transcript=eq;prot=eq; - 5 No
BD1G01530 bdi G-protein coupled receptor activity (Blast2GO) pid=Bradi1g01530.1;tid=Bradi1g01530.1;GeneName=Bradi1g01530;transcript=eq;prot=eq - Bd1 No
BD1G55230 bdi pid=Bradi1g55230.1;tid=Bradi1g55230.1;GeneName=Bradi1g55230;transcript=eq;prot=eq + Bd1 No
BD3G02410 bdi pid=Bradi3g02410.1;tid=Bradi3g02410.1;GeneName=Bradi3g02410;transcript=eq;prot=eq - Bd3 No
BD3G43180 bdi pid=Bradi3g43180.1;tid=Bradi3g43180.1;GeneName=Bradi3g43180;transcript=eq;prot=eq + Bd3 No
BD5G01410 bdi pid=Bradi5g01410.1;tid=Bradi5g01410.1;GeneName=Bradi5g01410;transcript=eq;prot=eq + Bd5 No
CP00003G01600 cpa name=evm.TU.supercontig_3.160;pid=evm.TU.supercontig_3.160;prot=eq;transcript=eq + supercontig_3 No
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