Gene family  

Sub-families
ORTHO006480 (24 genes in 19 species)
ORTHO006799 (24 genes in 18 species)
ORTHO009117 (20 genes in 17 species)
View all sub-families (14)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (5 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (12 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (14 genes)
mes
Manihot esculenta (7 genes)
mtr
Medicago truncatula (5 genes)
osa
Oryza sativa ssp. japonica (7 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ppa
Physcomitrella patens (8 genes)
ptr
Populus trichocarpa (9 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (6 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (6 genes)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (10 genes)



The gene family HOM000796 has 137 genes in 20 species (10 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 137 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G05120 aly name=fgenesh2_kg.1__512__AT1G05577.1;pid=470558;prot=eq;tid=470558 - scaffold_1 No
AL4G11920 aly name=scaffold_401203.1;pid=901702;prot=eq;tid=933215 - scaffold_4 No
AL5G14380 aly name=scaffold_501496.1;pid=905792;prot=eq;tid=937305 + scaffold_5 No
AL6G09850 aly name=fgenesh1_pg.C_scaffold_6000817;pid=350224;prot=eq;tid=350224 - scaffold_6 No
AL8G25970 aly name=fgenesh2_kg.8__1930__AT5G59790.1;pid=496114;prot=eq;tid=496114 + scaffold_8 No
AT1G05577 ath CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 167 Blast hits to 166 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;Domain of unknown function (DUF966) transcript=eq;prot=eq; - 1 No
AT2G28150 ath FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 2510 Blast hits to 686 proteins in 184 species: Archae - 0; Bacteria - 433; Metazoa - 315; Fungi - 216; Plants - 186; Viruses - 4; Other Eukaryotes - 1356 (source: NCBI BLink).;Domain of unknown function (DUF966) transcript=eq;prot=eq; + 2 No
AT3G46110 ath LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 195 Blast hits to 168 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Domain of unknown function (DUF966) transcript=eq;prot=eq; + 3 No
AT5G10150 ath FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Domain of unknown function (DUF966) transcript=eq;prot=eq; - 5 No
AT5G59790 ath CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT3G46110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Domain of unknown function (DUF966) transcript=eq;prot=eq; + 5 No
BD1G12010 bdi pid=Bradi1g12010.3;tid=Bradi1g12010.3;GeneName=Bradi1g12010;transcript=eq;prot=eq + Bd1 No
BD1G71710 bdi pid=Bradi1g71710.1;tid=Bradi1g71710.1;GeneName=Bradi1g71710;transcript=eq;prot=eq + Bd1 No
BD2G51680 bdi pid=Bradi2g51680.1;tid=Bradi2g51680.1;GeneName=Bradi2g51680;transcript=eq;prot=eq + Bd2 No
BD2G54510 bdi pid=Bradi2g54510.1;tid=Bradi2g54510.1;GeneName=Bradi2g54510;transcript=eq;prot=eq - Bd2 No
BD2G62490 bdi pid=Bradi2g62490.1;tid=Bradi2g62490.1;GeneName=Bradi2g62490;transcript=eq;prot=eq - Bd2 No
BD3G43040 bdi pid=Bradi3g43040.1;tid=Bradi3g43040.1;GeneName=Bradi3g43040;transcript=eq;prot=eq - Bd3 No
BD4G38820 bdi pid=Bradi4g38820.1;tid=Bradi4g38820.1;GeneName=Bradi4g38820;transcript=eq;prot=eq - Bd4 No
CP00001G03410 cpa name=evm.TU.supercontig_1.341;pid=evm.TU.supercontig_1.341;prot=eq;transcript=eq + supercontig_1 No
CP00190G00320 cpa name=evm.TU.supercontig_190.32;pid=evm.TU.supercontig_190.32;prot=eq;transcript=eq - supercontig_190 No
CP00476G00030 cpa name=evm.TU.supercontig_476.3;pid=evm.TU.supercontig_476.3;prot=eq;transcript=eq - supercontig_476 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier