Gene family  

Sub-families
ORTHO004233 (27 genes in 18 species)
ORTHO005443 (25 genes in 18 species)
ORTHO007993 (22 genes in 18 species)
View all sub-families (11)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (9 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (8 genes)
gma
Glycine max (13 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (16 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (13 genes)
rco
Ricinus communis (6 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (6 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (4 genes)



The gene family HOM000789 has 138 genes in 25 species (6 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 138 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G08830 aly name=fgenesh2_kg.463__5__AT2G39450.1;pid=497437;prot=eq;tid=497437 + scaffold_463 No
AL1G17170 aly name=fgenesh2_kg.1__1782__AT1G16310.1;pid=471828;prot=eq;tid=471828 + scaffold_1 No
AL1G45150 aly name=scaffold_104795.1;pid=892001;prot=eq;tid=923514 - scaffold_1 No
AL1G47740 aly name=Al_scaffold_0001_4698;pid=882931;prot=eq;tid=914444 + scaffold_1 No
AL2G28530 aly name=fgenesh2_kg.2__2250__AT1G79520.1;pid=477120;prot=eq;tid=477120 - scaffold_2 No
AL2G28680 aly name=Al_scaffold_0002_2678;pid=878084;prot=eq;tid=909597 + scaffold_2 No
AL4G25930 aly name=fgenesh2_kg.4__2026__AT2G39450.1;pid=482966;prot=eq;tid=482966 - scaffold_4 No
AL5G28580 aly name=Al_scaffold_0005_2722;pid=867243;prot=eq;tid=898756 - scaffold_5 No
AL7G28820 aly name=scaffold_703058.1;pid=915316;prot=eq;tid=946829 + scaffold_7 No
AT1G16310 ath Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT1G79520.1); Has 5067 Blast hits to 5063 proteins in 1838 species: Archae - 163; Bacteria - 4116; Metazoa - 44; Fungi - 281; Plants - 207; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).;Cation efflux family protein transcript=eq;prot=eq; + 1 No
AT1G79520 ath Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT1G16310.1).;Cation efflux family protein transcript=eq;prot=eq; - 1 No
AT2G39450 ath Encodes a Golgi-localized manganese transporter that is involved in Mn tolerance. When expressed into yeast cells, this gene confer Mn2+ and Cu2+ tolerance.;Cation efflux family protein transcript=eq;prot=eq; - 2 No
AT3G58060 ath Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT1G79520.2); Has 4333 Blast hits to 4329 proteins in 1671 species: Archae - 143; Bacteria - 3530; Metazoa - 46; Fungi - 247; Plants - 204; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).;Cation efflux family protein transcript=eq;prot=eq; - 3 No
BD1G68950 bdi iron ion transmembrane transporter activity (Blast2GO) pid=Bradi1g68950.1;tid=Bradi1g68950.1;GeneName=Bradi1g68950;transcript=eq;prot=eq + Bd1 No
BD2G02050 bdi zinc ion transmembrane transporter activity (Blast2GO) pid=Bradi2g02050.1;tid=Bradi2g02050.1;GeneName=Bradi2g02050;transcript=eq;prot=eq - Bd2 No
BD2G23070 bdi zinc ion transmembrane transporter activity (Blast2GO) pid=Bradi2g23070.1;tid=Bradi2g23070.1;GeneName=Bradi2g23070;transcript=eq;prot=eq - Bd2 No
BD2G54410 bdi zinc ion transmembrane transporter activity (Blast2GO) pid=Bradi2g54410.1;tid=Bradi2g54410.1;GeneName=Bradi2g54410;transcript=eq;prot=eq - Bd2 No
BD3G57420 bdi di-, tri-valent inorganic cation transmembrane transporter activity (Blast2GO) pid=Bradi3g57420.1;tid=Bradi3g57420.1;GeneName=Bradi3g57420;transcript=eq;prot=eq - Bd3 No
BD4G17430 bdi cation transmembrane transporter activity (Blast2GO) pid=Bradi4g17430.1;tid=Bradi4g17430.1;GeneName=Bradi4g17430;transcript=eq;prot=eq + Bd4 No
BD4G17450 bdi UDP-glucose 4-epimerase activity (Blast2GO) pid=Bradi4g17450.1;tid=Bradi4g17450.1;GeneName=Bradi4g17450;transcript=eq;prot=eq + Bd4 No
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