Gene family  

Sub-families
ORTHO002457 (32 genes in 19 species)
ORTHO002945 (30 genes in 21 species)
ORTHO004870 (26 genes in 18 species)
View all sub-families (8)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (10 genes)
ath
Arabidopsis thaliana (9 genes)
bdi
Brachypodium distachyon (6 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (5 genes)
gma
Glycine max (9 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (13 genes)
mes
Manihot esculenta (9 genes)
mtr
Medicago truncatula (4 genes)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (8 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (6 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (7 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (8 genes)
zma
Zea mays (9 genes)



The gene family HOM000787 has 138 genes in 22 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 138 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G32940 aly name=fgenesh2_kg.1__3316__AT1G31760.1;pid=473362;prot=eq;tid=473362 - scaffold_1 No
AL1G43740 aly name=fgenesh2_kg.1__4043__AT1G49520.1;pid=474089;prot=eq;tid=474089 + scaffold_1 No
AL3G03030 aly name=fgenesh2_kg.3__305__AT3G03590.1;pid=477604;prot=eq;tid=477604 - scaffold_3 No
AL3G20620 aly name=fgenesh1_pm.C_scaffold_3001681;pid=318665;prot=eq;tid=318665 + scaffold_3 No
AL3G34570 aly name=scaffold_303683.1;pid=899713;prot=eq;tid=931226 - scaffold_3 No
AL4G20960 aly name=fgenesh2_kg.4__1578__AT2G35605.1;pid=482518;prot=eq;tid=482518 + scaffold_4 No
AL5G17500 aly name=Al_scaffold_0005_1677;pid=866198;prot=eq;tid=897711 - scaffold_5 No
AL6G29410 aly name=scaffold_603049.1;pid=910992;prot=eq;tid=942505 + scaffold_6 No
AL7G06680 aly name=fgenesh2_kg.7__671__AT4G34290.1;pid=491238;prot=eq;tid=491238 - scaffold_7 No
AL7G19900 aly name=fgenesh2_kg.7__2060__AT4G22360.1;pid=492627;prot=eq;tid=492627 - scaffold_7 No
AT1G31760 ath SWIB/MDM2 domain superfamily protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT2G35605.1); Has 990 Blast hits to 904 proteins in 230 species: Archae - 0; Bacteria - 216; Metazoa - 58; Fungi - 182; Plants - 383; Viruses - 6; Other Eukaryotes - 145 (source: NCBI BLink).;SWIB/MDM2 domain superfamily protein transcript=eq;prot=eq; - 1 No
AT1G49520 ath SWIB complex BAF60b domain-containing protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835), DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT3G19080.1); Has 3197 Blast hits to 1975 proteins in 305 species: Archae - 0; Bacteria - 439; Metazoa - 696; Fungi - 468; Plants - 732; Viruses - 19; Other Eukaryotes - 843 (source: NCBI BLink).;SWIB complex BAF60b domain-containing protein transcript=eq;prot=eq; + 1 No
AT2G14880 ath SWIB/MDM2 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT4G34290.1); Has 1208 Blast hits to 1119 proteins in 254 species: Archae - 0; Bacteria - 214; Metazoa - 140; Fungi - 207; Plants - 389; Viruses - 11; Other Eukaryotes - 247 (source: NCBI BLink).;SWIB/MDM2 domain superfamily protein transcript=eq;prot=eq; - 2 No
AT2G35605 ath SWIB/MDM2 domain superfamily protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT1G31760.1); Has 1125 Blast hits to 1022 proteins in 233 species: Archae - 0; Bacteria - 211; Metazoa - 71; Fungi - 192; Plants - 413; Viruses - 10; Other Eukaryotes - 228 (source: NCBI BLink).;SWIB/MDM2 domain superfamily protein transcript=eq;prot=eq; + 2 No
AT3G03590 ath SWIB/MDM2 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT2G35605.1); Has 1268 Blast hits to 1165 proteins in 257 species: Archae - 0; Bacteria - 219; Metazoa - 186; Fungi - 200; Plants - 424; Viruses - 10; Other Eukaryotes - 229 (source: NCBI BLink).;SWIB/MDM2 domain superfamily protein transcript=eq;prot=eq; - 3 No
AT3G19080 ath SWIB complex BAF60b domain-containing protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835), DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT1G49520.1); Has 4780 Blast hits to 2475 proteins in 346 species: Archae - 0; Bacteria - 702; Metazoa - 1207; Fungi - 636; Plants - 993; Viruses - 61; Other Eukaryotes - 1181 (source: NCBI BLink).;SWIB complex BAF60b domain-containing protein transcript=eq;prot=eq; + 3 No
AT3G48600 ath SWIB complex BAF60b domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT2G35605.1).;SWIB complex BAF60b domain-containing protein transcript=eq;prot=eq; - 3 No
AT4G22360 ath SWIB complex BAF60b domain-containing protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835), DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT3G19080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;SWIB complex BAF60b domain-containing protein transcript=eq;prot=eq; + 4 No
AT4G34290 ath SWIB/MDM2 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT2G14880.1); Has 1224 Blast hits to 1123 proteins in 258 species: Archae - 0; Bacteria - 216; Metazoa - 147; Fungi - 184; Plants - 430; Viruses - 12; Other Eukaryotes - 235 (source: NCBI BLink).;SWIB/MDM2 domain superfamily protein transcript=eq;prot=eq; + 4 No
BD1G07640 bdi rDNA binding (Blast2GO) pid=Bradi1g07640.1;tid=Bradi1g07640.1;GeneName=Bradi1g07640;transcript=eq;prot=eq - Bd1 No
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