Gene family  

Sub-families
ORTHO001452 (38 genes in 25 species)
ORTHO002053 (34 genes in 20 species)
ORTHO002435 (32 genes in 22 species)
View all sub-families (7)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (11 genes)
ath
Arabidopsis thaliana (8 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (9 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (11 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (6 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (8 genes)
ptr
Populus trichocarpa (8 genes)
rco
Ricinus communis (6 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (7 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (11 genes)



The gene family HOM000785 has 138 genes in 25 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 138 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G33810 aly name=scaffold_103619.1;pid=890825;prot=eq;tid=922338 + scaffold_1 No
AL1G44700 aly name=scaffold_104750.1;pid=891956;prot=eq;tid=923469 - scaffold_1 No
AL3G10020 aly name=scaffold_301115.1;pid=897145;prot=eq;tid=928658 + scaffold_3 No
AL3G37860 aly name=fgenesh2_kg.3__3295__AT2G17130.1;pid=480594;prot=eq;tid=480594 - scaffold_3 No
AL3G38800 aly name=fgenesh2_kg.3__3399__AT2G17980.1;pid=480698;prot=eq;tid=480698 + scaffold_3 No
AL6G02420 aly name=fgenesh2_kg.6__235__AT5G03290.1;pid=487101;prot=eq;tid=487101 + scaffold_6 No
AL6G31990 aly name=fgenesh2_kg.6__2970__AT2G17980.1;pid=489836;prot=eq;tid=489836 + scaffold_6 No
AL7G04660 aly name=Al_scaffold_0007_433;pid=856934;prot=eq;tid=888447 - scaffold_7 No
AL7G05220 aly name=fgenesh2_kg.7__515__AT4G35650.1;pid=491082;prot=eq;tid=491082 - scaffold_7 No
AL7G05650 aly name=scaffold_700595.1;pid=912853;prot=eq;tid=944366 + scaffold_7 No
AL7G09830 aly name=scaffold_701034.1;pid=913292;prot=eq;tid=944805 - scaffold_7 No
AT1G32480 ath Predicted to encode a protein related isocitrate dehydrogenases, but it appears to be missing the sequences encoding the N-terminal portion of the protein.;isocitrate dehydrogenase IV transcript=eq;prot=eq; + 1 No
AT2G17130 ath Encodes a regulatory subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase.;isocitrate dehydrogenase subunit 2 transcript=eq;prot=eq; - 2 No
AT2G17980 ath member of SLY1 Gene Family;Sec1/munc18-like (SM) proteins superfamily transcript=eq;prot=eq; + 2 No
AT3G09810 ath Encodes a catalytic subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase;isocitrate dehydrogenase VI transcript=eq;prot=eq; + 3 No
AT4G31740 ath Sec1/munc18-like (SM) proteins superfamily; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT2G17980.1); Has 391 Blast hits to 391 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 139; Plants - 66; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).;Sec1/munc18-like (SM) proteins superfamily transcript=eq;prot=eq; + 4 No
AT4G35260 ath Encodes a regulatory subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase.;isocitrate dehydrogenase 1 transcript=eq;prot=eq; - 4 No
AT4G35650 ath Encodes a regulatory subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase. In contrast to the broadly expressed other regulatory (IDH-I and IDH-II) and catalytic (IDH-V and IDH-VI) subunits of this enzyme, IDH-III expression appears to be restricted largely to pollen.;isocitrate dehydrogenase III transcript=eq;prot=eq; + 4 No
AT5G03290 ath Encodes a catalytic subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase.;isocitrate dehydrogenase V transcript=eq;prot=eq; + 5 No
BD1G07410 bdi pid=Bradi1g07410.1;tid=Bradi1g07410.1;GeneName=Bradi1g07410;transcript=eq;prot=eq + Bd1 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier